CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74819
CDX93223
CDX93225
CDY07040
CDY07041
CDY20501
CDY24941
CDY60996

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08590.1	CDX74819	AT2G39940.1	14749489
AT5G08590.1	CDX93223	AT2G39940.1	14749489
AT5G08590.1	CDX93225	AT2G39940.1	14749489
AT5G08590.1	CDY07040	AT2G39940.1	14749489
AT5G08590.1	CDY07041	AT2G39940.1	14749489
AT5G08590.1	CDY20501	AT2G39940.1	14749489
AT5G08590.1	CDY24941	AT2G39940.1	14749489
AT5G08590.1	CDY60996	AT2G39940.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78346	Canola	cytosol	96.49	96.49
Bra006010.1-P	Field mustard	cytosol	96.76	96.24
CDX69936	Canola	cytosol	92.16	92.92
AT5G08590.1	Thale cress	cytosol	88.38	92.63
CDY21553	Canola	cytosol	94.05	92.31
GSMUA_Achr11P...	Banana	cytosol	15.68	87.88
CDX84430	Canola	cytosol	82.7	86.93
CDY41527	Canola	cytosol	83.24	86.27
KRH59681	Soybean	endoplasmic reticulum	75.95	80.06
KRH41015	Soybean	endoplasmic reticulum	75.41	79.49
KRH54011	Soybean	cytosol	73.24	78.32
PGSC0003DMT400060263	Potato	cytosol	75.41	77.93
Solyc05g056550.2.1	Tomato	cytosol	74.86	77.81
KRH63934	Soybean	endoplasmic reticulum	73.24	77.65
VIT_07s0031g03210.t01	Wine grape	cytosol	74.32	77.46
CDY46190	Canola	cytosol	71.89	75.57
Os04t0432000-02	Rice	cytosol	72.97	75.21
TraesCS2A01G303900.1	Wheat	cytosol	72.16	74.79
TraesCS2B01G320500.1	Wheat	cytosol	72.16	74.79
HORVU2Hr1G075470.2	Barley	cytosol	72.16	74.79
TraesCS2D01G302500.1	Wheat	cytosol, golgi	72.16	74.79
CDY34860	Canola	cytosol	72.16	74.79
CDY20973	Canola	cytosol	71.35	74.58
CDY34668	Canola	cytosol	72.43	74.24
EES06943	Sorghum	cytosol	72.43	73.63
CDX97923	Canola	cytosol	71.89	73.48
CDY72554	Canola	cytosol	57.3	73.36
GSMUA_Achr11P...	Banana	cytosol	55.14	73.12
Os02t0551100-01	Rice	plasma membrane	71.62	72.6
CDX88435	Canola	cytosol	53.78	69.82
KXG26327	Sorghum	cytosol	71.08	69.76
CDX89537	Canola	cytosol	63.24	69.64
CDY38921	Canola	cytosol	63.51	68.92
CDY68287	Canola	cytosol	20.0	66.67
CDY20594	Canola	cytosol	54.86	66.12
CDX87456	Canola	cytosol	56.76	65.83
CDX79254	Canola	cytosol	60.27	65.2
CDY19332	Canola	cytosol	72.43	64.58
CDX69016	Canola	cytosol	62.97	64.36
CDX75391	Canola	cytosol	62.7	64.27
CDX69364	Canola	cytosol	58.38	62.25
CDY12785	Canola	cytosol	60.81	62.15
CDY01456	Canola	cytosol	60.81	62.15
CDY23007	Canola	cytosol	58.65	60.11
CDY02082	Canola	cytosol	58.65	60.11
CDX97922	Canola	cytosol	38.11	57.55
CDY31613	Canola	cytosol	21.08	56.12
CDY68254	Canola	cytosol	28.38	52.24
CDY52825	Canola	plasma membrane	21.89	48.5
CDY03768	Canola	cytosol	72.43	45.5
Zm00001d042188_P001	Maize	plastid	22.97	42.5
KRH30137	Soybean	extracellular, plasma membrane	11.62	35.83
CDX68023	Canola	cytosol	60.27	35.62
Zm00001d047445_P001	Maize	plastid	16.22	28.3

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	GO:A0A078CVG4	EnsemblPlants:CDX81116	ProteinID:CDX81116
ProteinID:CDX81116.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00134565001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0004EE8469	SEG:seg	:	:

Description

BnaC03g03700D

Coordinates

chrLK031823:+:1804998..1807222

Molecular Weight (calculated)

42408.3 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.555

Length

370 amino acids

Sequence
(BLAST)

001: MDKYEVVKDL GTGNFGVARL LKHKETKELV AMKYIERGRK IDENVAREII NHRSLKHPNI IRFKEASFSF FFLVMLTPTH LAIVMEYASG GELFDRICTA
101: GRFSEAEARY FFQQLICGVD YCHSLQICHR DLKLENTLLD GSPAPLLKIC DFGYSKSSIL HSRPKSTVGT PAYIAPEVLS RREYDGKHAD VWSCGVTLYV
201: MLVGAYPFED PNDPKNFRKT IQRIMAIQYK IPDYVHISQE CKHLLSRIFV TNPAKRITLK EIKNHPWYLK NLPKELVESA QAVYYKRDNT SYSLQSIEDI
301: MKTVGEARNP ASSSSVSKSL GSGTAEEEDE DDEEDVEAEM EEDEEDEYEK HVKEAHSSCQ EPDKAQEERK

Best Arabidopsis Sequence Match ( AT5G08590.1 )
(BLAST)

001: MDKYDVVKDL GAGNFGVARL LRHKDTKELV AMKYIERGRK IDENVAREII NHRSLKHPNI IRFKEVILTP THLAIVMEYA SGGELFDRIC TAGRFSEAEA
101: RYFFQQLICG VDYCHSLQIC HRDLKLENTL LDGSPAPLLK ICDFGYSKSS ILHSRPKSTV GTPAYIAPEV LSRREYDGKH ADVWSCGVTL YVMLVGAYPF
201: EDPNDPKNFR KTIQRIMAVQ YKIPDYVHIS QECKHLLSRI FVTNSAKRIT LKEIKNHPWY LKNLPKELLE SAQAAYYKRD TSFSLQSVED IMKIVGEARN
301: PAPSTSAVKS SGSGADEEEE EDVEAEVEEE EDDEDEYEKH VKEAQSCQES DKA

Arabidopsis Description

SRK2GSRK2G [Source:UniProtKB/TrEMBL;Acc:A0A178UA36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.