CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87456	Canola	cytosol	84.8	90.91
CDX88435	Canola	cytosol	75.15	90.18
AT1G78290.2	Thale cress	cytosol	86.26	86.01
VIT_18s0001g06310.t01	Wine grape	cytosol	76.9	78.51
KRH72382	Soybean	cytosol	75.44	76.33
KRH16769	Soybean	cytosol	74.56	75.44
EER97562	Sorghum	cytosol	74.56	75.22
Os07t0622000-01	Rice	plasma membrane	74.56	75.22
Os03t0390200-01	Rice	cytosol	74.85	74.85
CDY68287	Canola	cytosol	24.27	74.77
EER92182	Sorghum	cytosol	75.15	74.71
CDY72554	Canola	cytosol	62.57	74.05
GSMUA_Achr3P01710_001	Banana	cytosol	73.39	74.04
TraesCS2D01G170700.1	Wheat	cytosol	73.68	73.9
TraesCS2B01G521800.1	Wheat	cytosol	73.98	73.76
TraesCS2A01G493800.1	Wheat	cytosol	73.68	73.68
TraesCS2D01G493700.1	Wheat	cytosol	73.68	73.68
PGSC0003DMT400045810	Potato	cytosol	72.22	73.51
Zm00001d022179_P001	Maize	cytosol	73.68	73.04
Solyc04g074500.2.1	Tomato	cytosol	71.05	72.54
PGSC0003DMT400079214	Potato	cytosol	71.05	72.54
Zm00001d047220_P003	Maize	cytosol	73.98	71.47
TraesCS2A01G163800.1	Wheat	cytosol	73.68	71.39
TraesCS2B01G189600.1	Wheat	cytosol	73.39	71.1
CDX69364	Canola	cytosol	70.47	69.45
HORVU2Hr1G110230.16	Barley	cytosol	69.3	68.9
CDY46190	Canola	cytosol	68.71	66.76
CDX69016	Canola	cytosol	69.59	65.75
CDX75391	Canola	cytosol	68.71	65.1
CDY34860	Canola	cytosol	67.54	64.71
CDY20973	Canola	cytosol	65.79	63.56
CDY34668	Canola	cytosol	66.96	63.43
CDX84430	Canola	cytosol	65.2	63.35
CDY12785	Canola	cytosol	66.96	63.26
CDY01456	Canola	cytosol	66.96	63.26
CDX97923	Canola	cytosol	66.96	63.26
CDY41527	Canola	cytosol	65.5	62.75
CDX69936	Canola	cytosol	66.37	61.85
CDY68254	Canola	cytosol	36.26	61.69
CDY23007	Canola	cytosol	64.04	60.66
CDY02082	Canola	cytosol	64.04	60.66
CDX78346	Canola	cytosol	65.5	60.54
CDX81116	Canola	cytosol	65.2	60.27
CDY21553	Canola	cytosol	66.37	60.21
CDX89537	Canola	cytosol	58.77	59.82
CDY38921	Canola	cytosol	59.36	59.53
CDX97922	Canola	cytosol	40.06	55.92
CDY20594	Canola	cytosol	50.0	55.7
CDY19332	Canola	cytosol	66.96	55.18
HORVU2Hr1G029900.2	Barley	cytosol	73.68	54.55
CDX68023	Canola	cytosol	97.66	53.35
CDY31613	Canola	cytosol	21.34	52.52
GSMUA_Achr1P21480_001	Banana	cytosol	75.44	51.29
CDY52825	Canola	plasma membrane	24.27	49.7
CDY03768	Canola	cytosol	68.42	39.73

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	GO:A0A078CT85	EnsemblPlants:CDX79254	ProteinID:CDX79254
ProteinID:CDX79254.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00131881001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343
PANTHER:PTHR24343:SF309	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0004EC3174	SEG:seg	:	:	:	:

Description

BnaC06g20490D

Coordinates

chrLK031817:-:772195..774347

Molecular Weight (calculated)

38170.4 Da

IEP (calculated)

5.795

GRAVY (calculated)

-0.278

Length

342 amino acids

Sequence
(BLAST)

001: MERYDIVKDI GSGNFGVAKL VRDKVSKELF AIKFIERGHK IDEHVKREIM NHRSLNHPNI IRFKEVLLTA THLAIVMEYA AGGELFERIC SAGRFGEDEA
101: RFFFQQLISG VSYCHSLHIC HRDLKLENTL LDGSTAPRVK ICDFGYSKSG VLHSQPKTTV GTPAYIAPEV LSKREYDGKI ADVWSCGVTL YVMLVGAYPF
201: EDPSDPKDFR KTIGRILRSQ YSIPDYVRVS DLCKHLLSRI FVANPEKRIT MEEIKNHSWF LKNLPVDMSE GSSRSNNPSQ SEEEIVWIIE EARKAITGAS
301: GLSGAGGSGD SGSGAMGSSM DLDDLDVDYD DDIETGDFVC TL

Best Arabidopsis Sequence Match ( AT1G78290.2 )
(BLAST)

001: MERYEIVKDI GSGNFGVAKL VRDKFSKELF AVKFIERGQK IDEHVQREIM NHRSLIHPNI IRFKEVLLTA THLALVMEYA AGGELFGRIC SAGRFSEDEA
101: RFFFQQLISG VNYCHSLQIC HRDLKLENTL LDGSEAPRVK ICDFGYSKSG VLHSQPKTTV GTPAYIAPEV LSTKEYDGKI ADVWSCGVTL YVMLVGAYPF
201: EDPSDPKDFR KTIGRILKAQ YAIPDYVRVS DECRHLLSRI FVANPEKRIT IEEIKNHSWF LKNLPVEMYE GSLMMNGPST QTVEEIVWII EEARKPITVA
301: TGLAGAGGSG GSSNGAIGSS SMDLDDLDTD FDDIDTADLL SPL

Arabidopsis Description

SRK2CSRK2C [Source:UniProtKB/TrEMBL;Acc:A0A178W6S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.