CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60940.1	CDX70521	AT5G13810.1	21798944
AT1G60940.1	CDX78539	AT5G13810.1	21798944
AT1G60940.1	CDY67732	AT5G13810.1	21798944
AT1G60940.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031475.1-P	Field mustard	cytosol	59.08	98.86
CDY46190	Canola	cytosol	59.08	98.86
CDY20973	Canola	cytosol	53.99	89.83
AT1G60940.1	Thale cress	cytosol	54.67	89.2
CDY34860	Canola	cytosol	53.82	88.8
CDX97923	Canola	cytosol	54.33	88.4
CDY34668	Canola	cytosol	53.82	87.81
KRH44077	Soybean	endoplasmic reticulum, nucleus	51.95	86.93
VIT_12s0035g00310.t01	Wine grape	cytosol	52.29	86.52
PGSC0003DMT400061170	Potato	cytosol	52.8	86.39
Solyc01g103940.2.1	Tomato	plastid	52.8	86.15
KRH26363	Soybean	nucleus	51.95	85.24
Os04t0432000-02	Rice	cytosol	49.41	81.06
EES06943	Sorghum	cytosol	49.24	79.67
TraesCS2D01G302500.1	Wheat	cytosol, golgi	48.22	79.55
TraesCS2B01G320500.1	Wheat	cytosol	48.22	79.55
TraesCS2A01G303900.1	Wheat	cytosol	48.22	79.55
HORVU2Hr1G075470.2	Barley	cytosol	48.05	79.27
CDY20594	Canola	cytosol	41.26	79.15
CDX84430	Canola	cytosol	46.86	78.41
Os02t0551100-01	Rice	plasma membrane	48.39	78.08
CDY41527	Canola	cytosol	47.2	77.87
CDY19332	Canola	cytosol	54.84	77.83
CDY72554	Canola	cytosol	38.03	77.51
CDX69936	Canola	cytosol	47.2	75.75
KXG26327	Sorghum	cytosol	48.22	75.33
CDY21553	Canola	cytosol	47.03	73.47
CDX78346	Canola	cytosol	46.01	73.24
CDX88435	Canola	cytosol	35.31	72.98
CDX81116	Canola	cytosol	45.5	72.43
CDY38921	Canola	cytosol	41.43	71.55
CDX89537	Canola	cytosol	40.75	71.43
CDY68287	Canola	cytosol	13.41	71.17
CDX87456	Canola	cytosol	37.86	69.91
CDX69016	Canola	cytosol	42.95	69.89
CDX75391	Canola	cytosol	42.27	68.98
CDX79254	Canola	cytosol	39.73	68.42
CDX69364	Canola	cytosol	38.88	65.99
CDY12785	Canola	cytosol	39.73	64.64
CDY01456	Canola	cytosol	39.73	64.64
CDX97922	Canola	cytosol	26.32	63.27
CDY23007	Canola	cytosol	38.54	62.88
CDY02082	Canola	cytosol	38.54	62.88
CDY31613	Canola	cytosol	13.92	58.99
CDY68254	Canola	cytosol	18.85	55.22
CDY52825	Canola	plasma membrane	13.75	48.5
CDX68023	Canola	cytosol	39.9	37.54

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	Gene3D:3.40.50.300	GO:A0A078EW21	EnsemblPlants:CDY03768
ProteinID:CDY03768	ProteinID:CDY03768.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008146	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00117136001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00069	PFAM:PF00685	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF52540	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	InterPro:Sulfotransferase_dom	UniParc:UPI0004EE3F81
SEG:seg	:	:	:	:	:

Description

BnaC01g28850D

Coordinates

chrLK031946:-:33901..38143

Molecular Weight (calculated)

67499.2 Da

IEP (calculated)

5.445

GRAVY (calculated)

-0.425

Length

589 amino acids

Sequence
(BLAST)

001: MEKYELVKDI GSGNFGVARL MRVKDSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIVMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDPEDPKNFR KTMQRILAVQ YKIPDYVHIS QDCKHILSHI FVANPLKRIT IAEIKKHPWF LKNLPRELTE IAQAAYYRKE NPTFSLQSVE EIMKIVEEAK
301: TPPPVSRSIG AFGWGGEEDA EEVSEEVVEE DEEDEYDKTV KQVSLVVFAF GSPVKSAVEE TDRGYVNLEI WLPKVRHHLA QISSFLYSHS SNPLLKSNPH
401: DLVPFIEGEL SLVPQVDDVA NDNGNTLFST HISRMDCYPN QFRSRVVRWS DSGPLNTLEE SFDMFCRGFS FYGPYLDHVM SYWNAYQENP DQILFLKYET
501: IRADTLPYVK RLAEFMGYGF TAEEEKKGVV EEVVNLCSFE TLKNLEANKG EKDREGTEGR EDIPSNFYPK SHISERERFK GTGLLEHDI

Best Arabidopsis Sequence Match ( AT1G60940.2 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S

Arabidopsis Description

SRK2BSerine/threonine-protein kinase SRK2B [Source:UniProtKB/Swiss-Prot;Acc:Q9C958]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.