CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60940.1	CDX70521	AT5G13810.1	21798944
AT1G60940.1	CDX78539	AT5G13810.1	21798944
AT1G60940.1	CDY67732	AT5G13810.1	21798944
AT1G60940.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031475.1-P	Field mustard	cytosol	100.0	100.0
CDY20973	Canola	cytosol	90.91	90.4
AT1G60940.1	Thale cress	cytosol	92.33	90.03
CDY34860	Canola	cytosol	90.91	89.64
CDX97923	Canola	cytosol	91.48	88.95
CDY34668	Canola	cytosol	90.62	88.37
KRH44077	Soybean	endoplasmic reticulum, nucleus	87.22	87.22
PGSC0003DMT400061170	Potato	cytosol	88.92	86.94
VIT_12s0035g00310.t01	Wine grape	cytosol	87.78	86.8
Solyc01g103940.2.1	Tomato	plastid	88.92	86.7
KRH26363	Soybean	nucleus	87.22	85.52
Os04t0432000-02	Rice	cytosol	83.24	81.62
EES06943	Sorghum	cytosol	82.67	79.95
CDY20594	Canola	cytosol	69.6	79.8
TraesCS2D01G302500.1	Wheat	cytosol, golgi	80.68	79.55
TraesCS2B01G320500.1	Wheat	cytosol	80.68	79.55
TraesCS2A01G303900.1	Wheat	cytosol	80.68	79.55
HORVU2Hr1G075470.2	Barley	cytosol	80.4	79.27
CDX84430	Canola	cytosol	78.69	78.69
Os02t0551100-01	Rice	plasma membrane	81.25	78.36
CDY41527	Canola	cytosol	79.26	78.15
CDY72554	Canola	cytosol	63.92	77.85
CDY19332	Canola	cytosol	91.48	77.59
KXG26327	Sorghum	cytosol	80.97	75.6
CDX69936	Canola	cytosol	78.41	75.2
CDX88435	Canola	cytosol	59.38	73.33
CDY21553	Canola	cytosol	78.12	72.94
CDX78346	Canola	cytosol	76.42	72.7
CDX81116	Canola	cytosol	75.57	71.89
CDY38921	Canola	cytosol	69.6	71.85
CDX89537	Canola	cytosol	68.47	71.73
CDY68287	Canola	cytosol	22.44	71.17
CDX87456	Canola	cytosol	63.64	70.22
CDX69016	Canola	cytosol	72.16	70.17
CDX75391	Canola	cytosol	71.02	69.25
CDX79254	Canola	cytosol	66.76	68.71
CDX69364	Canola	cytosol	65.34	66.28
CDY12785	Canola	cytosol	66.76	64.92
CDY01456	Canola	cytosol	66.76	64.92
CDX97922	Canola	cytosol	44.03	63.27
CDY23007	Canola	cytosol	64.77	63.16
CDY02082	Canola	cytosol	64.77	63.16
CDY03768	Canola	cytosol	98.86	59.08
CDY31613	Canola	cytosol	23.3	58.99
CDY68254	Canola	cytosol	31.82	55.72
CDY52825	Canola	plasma membrane	23.3	49.1
CDX68023	Canola	cytosol	67.05	37.7

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	GO:A0A078I5T5	UniProt:A0A078I5T5	EnsemblPlants:CDY46190
ProteinID:CDY46190	ProteinID:CDY46190.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00083394001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002544E4F	SEG:seg	:	:

Description

BnaA01g23120DBnaA01g23120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5T5]

Coordinates

chrLK032653:-:133296..136259

Molecular Weight (calculated)

40221.3 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.383

Length

352 amino acids

Sequence
(BLAST)

001: MEKYELVKDI GSGNFGVARL MRVKDSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIVMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDPEDPKNFR KTMQRILAVQ YKIPDYVHIS QDCKHILSRI FVANPLKRIT IAEIKKHPWF LKNLPRELTE IAQAAYYRKE NPTFSLQSVE EIMKIVEEAK
301: TPPPVSRSIG AFGWGGEEDA EEVSEEVVEE DEEDEYDKTV KQVHASGEIR IS

Best Arabidopsis Sequence Match ( AT1G60940.2 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S

Arabidopsis Description

SRK2BSerine/threonine-protein kinase SRK2B [Source:UniProtKB/Swiss-Prot;Acc:Q9C958]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.