Factsheet for VIT_12s0035g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60940.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44077	Soybean	endoplasmic reticulum, nucleus	90.45	91.48
PGSC0003DMT400061170	Potato	cytosol	90.73	89.72
KRH26363	Soybean	nucleus	90.45	89.69
Solyc01g103940.2.1	Tomato	plastid	90.73	89.47
Bra031475.1-P	Field mustard	cytosol	86.8	87.78
CDY46190	Canola	cytosol	86.8	87.78
VIT_07s0031g03210.t01	Wine grape	cytosol	85.96	86.2
CDY34860	Canola	cytosol	86.24	85.99
Bra031740.1-P	Field mustard	cytosol	85.96	85.71
CDY20973	Canola	cytosol	85.11	85.59
Bra018417.1-P	Field mustard	cytosol	84.83	85.31
Bra019889.1-P	Field mustard	cytosol	85.96	85.24
CDY34668	Canola	cytosol	86.24	85.04
AT1G60940.1	Thale cress	cytosol	85.96	84.76
CDX97923	Canola	cytosol	85.67	84.25
AT1G10940.2	Thale cress	cytosol	85.39	81.94
Os04t0432000-02	Rice	cytosol	82.3	81.62
TraesCS2A01G303900.1	Wheat	cytosol	81.46	81.23
TraesCS2B01G320500.1	Wheat	cytosol	81.46	81.23
TraesCS2D01G302500.1	Wheat	cytosol, golgi	81.46	81.23
HORVU2Hr1G075470.2	Barley	cytosol	81.18	80.95
Os02t0551100-01	Rice	plasma membrane	81.74	79.73
EES06943	Sorghum	cytosol	81.46	79.67
CDY20594	Canola	cytosol	66.57	77.2
KXG26327	Sorghum	cytosol	80.34	75.86
CDY19332	Canola	cytosol	85.67	73.49
VIT_02s0236g00130.t01	Wine grape	cytosol	69.1	72.35
VIT_00s0710g00020.t01	Wine grape	cytosol	68.54	72.19
VIT_07s0191g00070.t01	Wine grape	cytosol	68.54	72.19
VIT_18s0001g06310.t01	Wine grape	cytosol	66.29	70.45
Bra019890.1-P	Field mustard	cytosol	19.94	68.93
VIT_03s0063g01080.t01	Wine grape	cytosol	69.66	68.32
VIT_07s0197g00080.t01	Wine grape	cytosol	66.85	65.93
CDX97922	Canola	cytosol	42.42	61.63
CDY03768	Canola	cytosol	86.52	52.29

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100259302	wikigene:100259302	MapMan:18.4.5.2	Gene3D:3.30.200.20	EMBL:AM451587
ProteinID:CAN78793	ProteinID:CAN78793.1	ProteinID:CCB55078	ProteinID:CCB55078.1	ncoils:Coil	UniProt:F6HK75
EMBL:FN595990	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100259302	wikigene:LOC100259302	PFAM:PF00069	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC56294	TIGR:TC64295
UniParc:UPI00015CBAA8	ArrayExpress:VIT_12s0035g00310	EnsemblPlantsGene:VIT_12s0035g00310	EnsemblPlants:VIT_12s0035g00310.t01	unigene:Vvi.34	RefSeq:XP_002269221
RefSeq:XP_002269221.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:19581605..19587708

Molecular Weight (calculated)

40981.7 Da

IEP (calculated)

5.379

GRAVY (calculated)

-0.559

Length

356 amino acids

Sequence
(BLAST)

001: MEKYELVKDI GSGNFGVARL MRNKETKELV AMKYIERGQK IDENVAREII NHRSLRHPNI IRFKEVVLTP THLAIVMEYA AGGELFERIC NAGRFSEDEA
101: RYFFQQLISG VSYCHSMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKL ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFR KTISRIMAVQ YKIPDYVHIS QDCRHLLARI FVANPSRRVT IKDIKNHPWF LKNLPRELTE AAQALYYRRE NPTFSLQSIE DIMKIVDEAK
301: TPPPVSRSIG GFGWGGEEEE EEEEEKEEEV ETEEEEEDEY EKQVKEAHAS GEVHVS

Best Arabidopsis Sequence Match ( AT1G60940.2 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S

Arabidopsis Description

SRK2BSerine/threonine-protein kinase SRK2B [Source:UniProtKB/Swiss-Prot;Acc:Q9C958]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.