Factsheet for PGSC0003DMT400061170

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015465
PGSC0003DMT400047487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60940.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT1G60940.1	PGSC0003DMT400047487	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103940.2.1	Tomato	plastid	99.72	99.45
VIT_12s0035g00310.t01	Wine grape	cytosol	89.72	90.73
KRH44077	Soybean	endoplasmic reticulum, nucleus	87.78	89.77
Bra031475.1-P	Field mustard	cytosol	86.94	88.92
CDY46190	Canola	cytosol	86.94	88.92
KRH26363	Soybean	nucleus	87.78	88.02
CDY20973	Canola	cytosol	86.11	87.57
Bra018417.1-P	Field mustard	cytosol	85.83	87.29
CDY34860	Canola	cytosol	85.56	86.27
AT1G60940.1	Thale cress	cytosol	86.39	86.15
Bra031740.1-P	Field mustard	cytosol	85.28	85.99
Bra019889.1-P	Field mustard	cytosol	85.56	85.79
CDY34668	Canola	cytosol	85.56	85.32
CDX97923	Canola	cytosol	85.28	84.81
AT1G10940.2	Thale cress	cytosol	85.83	83.29
Os04t0432000-02	Rice	cytosol	83.06	83.29
PGSC0003DMT400060263	Potato	cytosol	81.67	82.12
Os02t0551100-01	Rice	plasma membrane	81.94	80.82
EES06943	Sorghum	cytosol	81.67	80.77
TraesCS2D01G302500.1	Wheat	cytosol, golgi	79.44	80.11
TraesCS2B01G320500.1	Wheat	cytosol	79.44	80.11
TraesCS2A01G303900.1	Wheat	cytosol	79.44	80.11
HORVU2Hr1G075470.2	Barley	cytosol	79.17	79.83
CDY20594	Canola	cytosol	66.67	78.18
KXG26327	Sorghum	cytosol	81.39	77.72
CDY19332	Canola	cytosol	86.11	74.7
PGSC0003DMT400067426	Potato	cytosol	66.94	71.09
Bra019890.1-P	Field mustard	cytosol	20.0	69.9
PGSC0003DMT400079214	Potato	cytosol	63.33	68.06
PGSC0003DMT400045810	Potato	cytosol	62.5	66.96
PGSC0003DMT400066617	Potato	cytosol, nucleus	67.22	66.85
PGSC0003DMT400060762	Potato	cytosol, plastid	63.61	66.57
PGSC0003DMT400041670	Potato	cytosol	51.94	62.33
CDX97922	Canola	cytosol	41.94	61.63
CDY03768	Canola	cytosol	86.39	52.8

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102600490	MapMan:18.4.5.2	Gene3D:3.30.200.20	ProteinID:AFR68941	ProteinID:AFR68941.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
UniProt:J9ULI1	EMBL:JX280914	InterPro:Kinase-like_dom_sf	RefSeq:NP_001274892.1	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400023803
PGSC:PGSC0003DMG400023803	EnsemblPlants:PGSC0003DMT400061170	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00027EF5EA	RefSeq:XP_006349355.1	RefSeq:XP_006349356.1	SEG:seg	:

Description

Osmotic stress-activated protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400023803]

Coordinates

chr1:+:80585367..80589963

Molecular Weight (calculated)

41493.3 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.574

Length

360 amino acids

Sequence
(BLAST)

001: MEKYELVKDI GSGNFGVARL MRNKETKELV AMKYIERGHK IDENVAREII NHKSLRHPNI IRFKEVVLTP THLAIVMEYA AGGELFERIC NAGRFSEDEA
101: RYFFQQLISG VHYCHNMQIC HRDLKLENTL LDGSAAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKL ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFR KTIQRIMAVQ YKIPDYVHIS QDCRHLLSRI FVANSARRIT IKEIKSHPWF LKNLPRELTE AAQAAYYRKE NPTFSLQSVE EIMKIVEEAK
301: TPPPVSRSVS GFGWGGEEEE EEKEGDVEEE VEEEEDEEEE DEYDKQVKQA HQSLGEVRLT

Best Arabidopsis Sequence Match ( AT1G60940.2 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S

Arabidopsis Description

SRK2BSerine/threonine-protein kinase SRK2B [Source:UniProtKB/Swiss-Prot;Acc:Q9C958]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.