Factsheet for PGSC0003DMT400079214

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 28506210
nucleus: 28506210

gfp PMID: 28506210 doi

J Bai, J Mao, H Yang, A Khan, A Fan, S Liu, J Zhang, D Wang, H Gao, J Zhang

College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., College of Horticulture, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. jlzhang@lzu.edu.cn., International Potato Center (CIP), Avenida La Molina 1895, La Molina Apartado, 1558, Lima, Peru., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China. jlzhang@lzu.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074500.2.1	Tomato	cytosol	97.91	97.91
PGSC0003DMT400045810	Potato	cytosol	79.4	79.17
VIT_18s0001g06310.t01	Wine grape	cytosol	78.21	78.21
KRH72382	Soybean	cytosol	78.51	77.81
KRH16769	Soybean	cytosol	77.91	77.22
CDX88435	Canola	cytosol	64.78	76.14
EER92182	Sorghum	cytosol	76.12	74.13
GSMUA_Achr3P01710_001	Banana	cytosol	74.63	73.75
Os07t0622000-01	Rice	plasma membrane	74.33	73.45
Os03t0390200-01	Rice	cytosol	74.93	73.39
CDX87456	Canola	cytosol	69.85	73.35
EER97562	Sorghum	cytosol	73.73	72.86
AT1G78290.2	Thale cress	cytosol	74.33	72.59
PGSC0003DMT400060762	Potato	cytosol, plastid	74.03	72.09
TraesCS2D01G170700.1	Wheat	cytosol	72.84	71.55
TraesCS2A01G493800.1	Wheat	cytosol	72.84	71.34
TraesCS2B01G521800.1	Wheat	cytosol	72.84	71.14
CDX79254	Canola	cytosol	72.54	71.05
Zm00001d022179_P001	Maize	cytosol	73.13	71.01
TraesCS2D01G493700.1	Wheat	cytosol	72.24	70.76
Zm00001d047220_P003	Maize	cytosol	74.33	70.34
TraesCS2B01G189600.1	Wheat	cytosol	72.84	69.12
TraesCS2A01G163800.1	Wheat	cytosol	72.84	69.12
PGSC0003DMT400067426	Potato	cytosol	69.85	69.03
HORVU2Hr1G110230.16	Barley	cytosol	70.15	68.31
PGSC0003DMT400041670	Potato	cytosol	57.01	63.67
PGSC0003DMT400061170	Potato	cytosol	68.06	63.33
PGSC0003DMT400066617	Potato	cytosol, nucleus	67.76	62.71
PGSC0003DMT400060263	Potato	cytosol	66.87	62.57
Bra035026.1-P	Field mustard	cytosol	31.34	62.13
HORVU2Hr1G029900.2	Barley	cytosol	72.84	52.81
Bra003650.1-P	Field mustard	cytosol	72.84	51.05
GSMUA_Achr1P21480_001	Banana	cytosol	74.03	49.3
CDX68023	Canola	cytosol	72.84	38.98

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	ProteinID:AFR68938	ProteinID:AFR68938.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	EMBL:JX280911	InterPro:Kinase-like_dom_sf
UniProt:M1D1F6	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400030830	PGSC:PGSC0003DMG400030830	EnsemblPlants:PGSC0003DMT400079214	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343	PANTHER:PTHR24343:SF207	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294890E	SEG:seg

Description

Serine/threonine-protein kinase SAPK1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030830]

Coordinates

chr4:-:64012103..64015530

Molecular Weight (calculated)

37776.4 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.136

Length

335 amino acids

Sequence
(BLAST)

001: MERYEIVKEL GSGNFGVAKL VCDKNTKELF AVKFIERGQK IDEHVQREIM NHRSLKHPNI VRFKEVLLTP THLAIVMEYA AGGELFARIC NAGRFNEDEA
101: RFFFQQLISG VSYCHFMQIC HRDLKLENTL LDGSAAPRVK ICDFGYSKSS VFHSQPKSTV GTPAYVAPEV LTRKEYDGEL ADVWSCGVTL YVMLVGAYPF
201: QDSSDPKNFT KTISKILTAR YSIPEQIQIS LECRHLIARI FVADPEKRIT IPEIKMHPWF LKNLPVELME GGSYQCADVN NPSQSMEEVL AIIQEARVPL
301: LVGTHSYGGS MELDELDEAD IEDVIETSAD FAGLL

Best Arabidopsis Sequence Match ( AT1G78290.2 )
(BLAST)

001: MERYEIVKDI GSGNFGVAKL VRDKFSKELF AVKFIERGQK IDEHVQREIM NHRSLIHPNI IRFKEVLLTA THLALVMEYA AGGELFGRIC SAGRFSEDEA
101: RFFFQQLISG VNYCHSLQIC HRDLKLENTL LDGSEAPRVK ICDFGYSKSG VLHSQPKTTV GTPAYIAPEV LSTKEYDGKI ADVWSCGVTL YVMLVGAYPF
201: EDPSDPKDFR KTIGRILKAQ YAIPDYVRVS DECRHLLSRI FVANPEKRIT IEEIKNHSWF LKNLPVEMYE GSLMMNGPST QTVEEIVWII EEARKPITVA
301: TGLAGAGGSG GSSNGAIGSS SMDLDDLDTD FDDIDTADLL SPL

Arabidopsis Description

SRK2CSRK2C [Source:UniProtKB/TrEMBL;Acc:A0A178W6S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.