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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28506210
gfp PMID: 28506210 doi
J Bai, J Mao, H Yang, A Khan, A Fan, S Liu, J Zhang, D Wang, H Gao, J Zhang
College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., College of Horticulture, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. jlzhang@lzu.edu.cn., International Potato Center (CIP), Avenida La Molina 1895, La Molina Apartado, 1558, Lima, Peru., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China. jlzhang@lzu.edu.cn.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400046382

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33950.1 PGSC0003DMT400046382 AT4G26080.1 16365038
AT4G33950.1 PGSC0003DMT400046382 AT4G26080.1 19874541
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g108280.2.1 Tomato cytosol 100.0 100.0
CDY72554 Canola cytosol 74.31 93.08
KRG89230 Soybean cytosol 93.37 92.86
KRH71186 Soybean endoplasmic reticulum 90.33 92.37
AT4G33950.1 Thale cress cytosol 91.99 91.99
VIT_03s0063g01080.t01 Wine grape cytosol 91.71 91.46
KRH49772 Soybean cytosol 92.54 90.54
CDX75391 Canola cytosol 90.06 90.3
Bra011481.1-P Field mustard cytosol 90.06 90.06
KRH50231 Soybean cytosol 91.16 89.92
CDX69016 Canola cytosol 89.5 89.5
Bra017615.1-P Field mustard cytosol 88.95 88.95
PGSC0003DMT400067426 Potato cytosol 67.4 71.98
PGSC0003DMT400060762 Potato cytosol, plastid 66.3 69.77
PGSC0003DMT400045810 Potato cytosol 63.54 68.45
PGSC0003DMT400079214 Potato cytosol 62.71 67.76
PGSC0003DMT400061170 Potato cytosol 66.85 67.22
PGSC0003DMT400060263 Potato cytosol 64.09 64.8
PGSC0003DMT400041670 Potato cytosol 52.76 63.67
Protein Annotations
Gene3D:1.10.510.10EntrezGene:102599363MapMan:18.4.5.2MapMan:26.2.1.3Gene3D:3.30.200.20ProteinID:AFR68940
ProteinID:AFR68940.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0005985GO:GO:0006464
GO:GO:0006468GO:GO:0006629GO:GO:0006636GO:GO:0006810GO:GO:0006950GO:GO:0006970
GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009414GO:GO:0009605GO:GO:0009607GO:GO:0009628GO:GO:0009651GO:GO:0009719
GO:GO:0009737GO:GO:0009789GO:GO:0009987GO:GO:0010118GO:GO:0010119GO:GO:0010359
GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0019432GO:GO:0019538GO:GO:0019903
GO:GO:0040007GO:GO:0042742GO:GO:0042802GO:GO:0046777GO:GO:0048366GO:GO:1902456
GO:GO:2000377InterPro:IPR000719EMBL:JX280913InterPro:Kinase-like_dom_sfUniProt:M1CFW5PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400025895PGSC:PGSC0003DMG400025895EnsemblPlants:PGSC0003DMT400066617PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PANTHER:PTHR24343PANTHER:PTHR24343:SF162InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0002768244RefSeq:XP_006346436.1RefSeq:XP_006346437.1RefSeq:XP_015163686.1
SEG:seg:::::
Description
Serine/threonine-protein kinase SAPK10 [Source:PGSC_GENE;Acc:PGSC0003DMG400025895]
Coordinates
chr1:-:84685242..84688943
Molecular Weight (calculated)
41112.0 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.329
Length
362 amino acids
Sequence
(BLAST)
001: MDRTAVTVGP GMDVPIMHDS DRYELVRDIG AGNFGVARLM RDRQTNELVA VKYIERGEKI DENVKREIIN HRSLRHPNIV RFKEVILTPT HLAIVMEFAS
101: GGELFERICN AGRFSEDEAR FFFQQLISGV SYCHAMQVCH RDLKLENTLL DGSPAPRLKI CDFGYSKSSV LHSQPKSTVG TPAYIAPEVL LKKEYDGKIA
201: DVWSCGVTLY VMLVGAYPFE DPEEPKNFRK TIQRILNVQY SIPDYVHISP ECRHLISRIF VADPAKRISI PEIKNHEWFL KNLPADLMDN TTNNQFEEPD
301: QRMQSIDEIM QIITEATIPA AGTNSLNHYL TGSLDIDDDM EEDLESDPDL DIDSSGEIVY AM
Best Arabidopsis Sequence Match ( AT4G33950.1 )
(BLAST)
001: MDRPAVSGPM DLPIMHDSDR YELVKDIGSG NFGVARLMRD KQSNELVAVK YIERGEKIDE NVKREIINHR SLRHPNIVRF KEVILTPTHL AIVMEYASGG
101: ELFERICNAG RFSEDEARFF FQQLISGVSY CHAMQVCHRD LKLENTLLDG SPAPRLKICD FGYSKSSVLH SQPKSTVGTP AYIAPEVLLK KEYDGKVADV
201: WSCGVTLYVM LVGAYPFEDP EEPKNFRKTI HRILNVQYAI PDYVHISPEC RHLISRIFVA DPAKRISIPE IRNHEWFLKN LPADLMNDNT MTTQFDESDQ
301: PGQSIEEIMQ IIAEATVPPA GTQNLNHYLT GSLDIDDDME EDLESDLDDL DIDSSGEIVY AM
Arabidopsis Description
SRK2ESerine/threonine-protein kinase SRK2E [Source:UniProtKB/Swiss-Prot;Acc:Q940H6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.