CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33950.1	KRH02667	AT4G26080.1	16365038
AT4G33950.1	KRH12454	AT4G26080.1	16365038
AT4G33950.1	KRH19237	AT4G26080.1	16365038
AT4G33950.1	KRH37441	AT4G26080.1	16365038
AT4G33950.1	KRH02667	AT4G26080.1	19874541
AT4G33950.1	KRH12454	AT4G26080.1	19874541
AT4G33950.1	KRH19237	AT4G26080.1	19874541
AT4G33950.1	KRH37441	AT4G26080.1	19874541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50231	Soybean	cytosol	98.59	95.1
KRG89230	Soybean	cytosol	94.35	91.76
CDY72554	Canola	cytosol	74.29	91.0
Solyc01g108280.2.1	Tomato	cytosol	92.37	90.33
PGSC0003DMT400066617	Potato	cytosol, nucleus	92.37	90.33
KRH49772	Soybean	cytosol	94.07	90.0
AT4G33950.1	Thale cress	cytosol	90.68	88.67
VIT_03s0063g01080.t01	Wine grape	cytosol	90.11	87.88
CDX75391	Canola	cytosol	89.55	87.81
Bra011481.1-P	Field mustard	cytosol	89.55	87.57
CDX69016	Canola	cytosol	88.42	86.46
Bra017615.1-P	Field mustard	cytosol	88.14	86.19
KRH04679	Soybean	nucleus, plastid	82.49	81.11
KRH57751	Soybean	nucleus	82.2	80.83
KRH76942	Soybean	cytosol	68.36	80.13
KRH28516	Soybean	cytosol	81.07	79.94
KRH76943	Soybean	cytosol, extracellular, plasma membrane	12.71	78.95
KRH28215	Soybean	cytosol, plastid, vacuole	25.71	75.21
KRH33219	Soybean	cytosol	26.84	74.8
KRH72382	Soybean	cytosol	68.93	72.19
KRH57532	Soybean	cytosol, endoplasmic reticulum, nucleus	68.36	72.02
KRH16769	Soybean	cytosol	68.64	71.89
KRH04240	Soybean	cytosol	67.8	71.43
KRH43149	Soybean	cytosol	68.93	70.72
KRH77286	Soybean	cytosol	67.23	70.21
KRH28204	Soybean	cytosol	67.23	70.21
KRH44077	Soybean	endoplasmic reticulum, nucleus	68.36	68.75
KRH41015	Soybean	endoplasmic reticulum	67.51	68.09
KRH59681	Soybean	endoplasmic reticulum	67.51	68.09
KRH26363	Soybean	nucleus	68.64	67.69
KRH59295	Soybean	cytosol, endoplasmic reticulum	60.17	67.62
KRH54011	Soybean	cytosol	65.82	67.34
KRH63934	Soybean	endoplasmic reticulum	66.1	67.05
KRH43042	Soybean	cytosol	44.63	60.31
KRH08581	Soybean	mitochondrion	15.82	49.12
KRH30137	Soybean	extracellular, plasma membrane	15.54	45.83

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100806771	MapMan:18.4.5.2	MapMan:26.2.1.3	Gene3D:3.30.200.20	EMBL:ACUP02000878
EnsemblPlantsGene:GLYMA_02G135500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	UniProt:K7K850	EnsemblPlants:KRH71186	ProteinID:KRH71186	ProteinID:KRH71186.1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343
PANTHER:PTHR24343:SF162	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002337B6B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:14024770..14028897

Molecular Weight (calculated)

40208.8 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.359

Length

354 amino acids

Sequence
(BLAST)

001: MSVGPGMDLP IMHDSDRYEF VRDIGSGNFG VARLMRDKHT EELVAVKYIE RGEKIDENVQ REIINHRSLR HPNIVRFKEV ILTPTHLAIV MEYASGGELF
101: ERICNAGRFS EDEARFFFQQ LISGVSYCHA MQVCHRDLKL ENTLLDGSPA PRLKICDFGY SKSSVLHSQP KSTVGTPAYI APEVLLKKEY DGKIADVWSC
201: GVTLYVMLVG AYPFEDPEEP KNFRKTIHRI LNVQYSIPDY VHISSECRHL ISRIFVADPA KRISIPEIRN HEWFLKNLQS DLMDGNTNNN QFEEPDQPMQ
301: SIEEIMQIIK EATIPAAGSQ SLNHDLTGSL DIDDDMDSDP DLDLDSSGEI VYAM

Best Arabidopsis Sequence Match ( AT3G50500.1 )
(BLAST)

001: MDPATNSPIM PIDLPIMHDS DRYDFVKDIG SGNFGVARLM TDRVTKELVA VKYIERGEKI DENVQREIIN HRSLRHPNIV RFKEVILTPS HLAIVMEYAA
101: GGELYERICN AGRFSEDEAR FFFQQLISGV SYCHAMQICH RDLKLENTLL DGSPAPRLKI CDFGYSKSSV LHSQPKSTVG TPAYIAPEIL LRQEYDGKLA
201: DVWSCGVTLY VMLVGAYPFE DPQEPRDYRK TIQRILSVTY SIPEDLHLSP ECRHLISRIF VADPATRITI PEITSDKWFL KNLPGDLMDE NRMGSQFQEP
301: EQPMQSLDTI MQIISEATIP TVRNRCLDDF MADNLDLDDD MDDFDSESEI DVDSSGEIVY AL

Arabidopsis Description

SPK-2-2SNF1-related protein kinase 2.2 [Source:UniProtKB/TrEMBL;Acc:F4J0N1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.