CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441
KRH45453
KRH75621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66880.1	KRH45453	AT4G17870.1	19874541
AT5G66880.1	KRH75621	AT4G17870.1	19874541
AT5G66880.1	KRH02667	AT4G26080.1	19874541
AT5G66880.1	KRH12454	AT4G26080.1	19874541
AT5G66880.1	KRH19237	AT4G26080.1	19874541
AT5G66880.1	KRH37441	AT4G26080.1	19874541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024775_P002	Maize	cytosol	32.23	36.11
CDY52825	Canola	plasma membrane	47.93	34.73
KRH76942	Soybean	cytosol	80.99	32.45
KRH08581	Soybean	mitochondrion	29.75	31.58
KRH30137	Soybean	extracellular, plasma membrane	29.75	30.0
KRH57751	Soybean	nucleus	84.3	28.33
KRH04679	Soybean	nucleus, plastid	83.47	28.06
KRH28516	Soybean	cytosol	80.99	27.3
KRH33219	Soybean	cytosol	28.1	26.77
KRH59295	Soybean	cytosol, endoplasmic reticulum	67.77	26.03
VIT_07s0197g00080.t01	Wine grape	cytosol	76.86	25.76
KRH71186	Soybean	endoplasmic reticulum	75.21	25.71
TraesCS5D01G411900.1	Wheat	cytosol	77.69	25.68
HORVU5Hr1G097630.1	Barley	cytosol	77.69	25.68
TraesCS5B01G406400.1	Wheat	cytosol	77.69	25.68
TraesCS5A01G401700.1	Wheat	cytosol	77.69	25.68
AT5G66880.1	Thale cress	cytosol	76.03	25.48
Solyc02g090390.2.1	Tomato	cytosol	73.55	25.28
KRG89230	Soybean	cytosol	76.03	25.27
KRH43042	Soybean	cytosol	54.55	25.19
EER93398	Sorghum	cytosol	76.03	25.14
GSMUA_Achr4P28190_001	Banana	cytosol	75.21	25.07
Os03t0610900-01	Rice	cytosol	74.38	24.86
Zm00001d013736_P001	Maize	cytosol	74.38	24.86
EER91234	Sorghum	cytosol	74.38	24.86
Os03t0764800-01	Rice	plasma membrane	76.03	24.8
GSMUA_Achr4P23200_001	Banana	cytosol	75.21	24.8
KRH49772	Soybean	cytosol	75.21	24.59
KRH50231	Soybean	cytosol	74.38	24.52
AT3G50500.2	Thale cress	cytosol	74.38	24.39
TraesCS4A01G235600.2	Wheat	cytosol	72.73	24.38
TraesCS4D01G078100.2	Wheat	cytosol	72.73	24.38
TraesCS4B01G079300.1	Wheat	cytosol	72.73	24.38
HORVU4Hr1G013540.3	Barley	cytosol	72.73	24.38
Bra012897.1-P	Field mustard	cytosol	72.73	24.38
Bra012113.1-P	Field mustard	cytosol	71.9	24.37
Zm00001d013201_P003	Maize	cytosol	76.03	24.21
Zm00001d033339_P002	Maize	cytosol, extracellular	72.73	24.18
KRH43149	Soybean	cytosol	68.59	24.06
Os12t0586100-01	Rice	cytosol	71.07	23.82
KRH77286	Soybean	cytosol	66.12	23.6
KRH28204	Soybean	cytosol	66.12	23.6
KRH44077	Soybean	endoplasmic reticulum, nucleus	67.77	23.3
GSMUA_Achr2P13360_001	Banana	cytosol	70.25	23.29
KRH72382	Soybean	cytosol	64.46	23.08
KRH16769	Soybean	cytosol	64.46	23.08
KRH41015	Soybean	endoplasmic reticulum	66.94	23.08
KRH57532	Soybean	cytosol, endoplasmic reticulum, nucleus	63.64	22.92
KRH26363	Soybean	nucleus	67.77	22.84
KRH54011	Soybean	cytosol	65.29	22.83
KRH04240	Soybean	cytosol	62.81	22.62
EES17292	Sorghum	cytosol	67.77	22.53
KRH59681	Soybean	endoplasmic reticulum	65.29	22.51
HORVU0Hr1G011570.1	Barley	cytosol	66.12	22.41
KRH63934	Soybean	endoplasmic reticulum	64.46	22.35
TraesCS5B01G075800.1	Wheat	cytosol	66.94	22.31
TraesCS5D01G081700.1	Wheat	cytosol	66.94	22.25
TraesCS5A01G069500.1	Wheat	cytosol	66.12	22.22
HORVU5Hr1G018340.2	Barley	cytosol	66.12	21.56
Zm00001d034161_P003	Maize	cytosol	71.07	21.55
Zm00001d011604_P003	Maize	mitochondrion	33.06	8.42
Zm00001d020262_P003	Maize	cytosol	1.65	2.74
KRH76943	Soybean	cytosol, extracellular, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	UniProt:A0A0R0HCD7	EMBL:ACUP02006741	EnsemblPlantsGene:GLYMA_11G039600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719	EnsemblPlants:KRH28215
ProteinID:KRH28215	ProteinID:KRH28215.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFscan:PS50011	PANTHER:PTHR24343
PANTHER:PTHR24343:SF162	InterPro:Prot_kinase_dom	SUPFAM:SSF56112	UniParc:UPI0006EE15AE	:	:

Description

hypothetical protein

Coordinates

chr11:+:2826544..2828838

Molecular Weight (calculated)

13419.1 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.060

Length

121 amino acids

Sequence
(BLAST)

001: MSSVLHSQPK STVGTPAYIA PEVLLKQEYD GKLADVWSCG VTLYVMLVGA YPFEDPNEPK DFRKTIQRVL SVQYSIPGGV QISPECGHLI SRIFVFDPAE
101: VISISNSWPP TAIYKFDNTQ P

Best Arabidopsis Sequence Match ( AT3G50500.1 )
(BLAST)

001: MDPATNSPIM PIDLPIMHDS DRYDFVKDIG SGNFGVARLM TDRVTKELVA VKYIERGEKI DENVQREIIN HRSLRHPNIV RFKEVILTPS HLAIVMEYAA
101: GGELYERICN AGRFSEDEAR FFFQQLISGV SYCHAMQICH RDLKLENTLL DGSPAPRLKI CDFGYSKSSV LHSQPKSTVG TPAYIAPEIL LRQEYDGKLA
201: DVWSCGVTLY VMLVGAYPFE DPQEPRDYRK TIQRILSVTY SIPEDLHLSP ECRHLISRIF VADPATRITI PEITSDKWFL KNLPGDLMDE NRMGSQFQEP
301: EQPMQSLDTI MQIISEATIP TVRNRCLDDF MADNLDLDDD MDDFDSESEI DVDSSGEIVY AL

Arabidopsis Description

SPK-2-2SNF1-related protein kinase 2.2 [Source:UniProtKB/TrEMBL;Acc:F4J0N1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.