CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59681	Soybean	endoplasmic reticulum	98.58	98.58
KRH63934	Soybean	endoplasmic reticulum	91.17	91.69
KRH54011	Soybean	cytosol	90.03	91.33
GSMUA_Achr11P...	Banana	cytosol	16.81	89.39
VIT_07s0031g03210.t01	Wine grape	cytosol	86.61	85.63
KRH44077	Soybean	endoplasmic reticulum, nucleus	84.9	84.66
KRH26363	Soybean	nucleus	85.75	83.84
CDX84430	Canola	cytosol	83.76	83.52
Bra038652.1-P	Field mustard	cytosol	84.33	82.91
CDY41527	Canola	cytosol	84.33	82.91
Solyc05g056550.2.1	Tomato	cytosol	84.05	82.87
Os04t0432000-02	Rice	cytosol	84.05	82.17
PGSC0003DMT400060263	Potato	cytosol	83.19	81.56
TraesCS2A01G303900.1	Wheat	cytosol	82.05	80.67
TraesCS2B01G320500.1	Wheat	cytosol	82.05	80.67
TraesCS2D01G302500.1	Wheat	cytosol, golgi	82.05	80.67
HORVU2Hr1G075470.2	Barley	cytosol	81.77	80.39
GSMUA_Achr11P...	Banana	cytosol	62.96	79.21
EES06943	Sorghum	cytosol	82.05	79.12
CDX69936	Canola	cytosol	81.2	77.66
Bra009354.1-P	Field mustard	cytosol	81.2	77.03
Os02t0551100-01	Rice	plasma membrane	79.49	76.44
CDY21553	Canola	cytosol	81.77	76.13
CDX78346	Canola	cytosol	79.77	75.68
CDX81116	Canola	cytosol	79.49	75.41
KXG26327	Sorghum	cytosol	80.91	75.33
Bra006010.1-P	Field mustard	cytosol	79.77	75.27
KRH33219	Soybean	cytosol	26.21	72.44
AT4G11373.1	Thale cress	cytosol	22.79	70.8
KRH57532	Soybean	cytosol, endoplasmic reticulum, nucleus	66.95	69.94
KRH28204	Soybean	cytosol	67.52	69.91
KRH77286	Soybean	cytosol	67.24	69.62
KRH04240	Soybean	cytosol	66.38	69.35
KRH43149	Soybean	cytosol	68.09	69.28
KRH72382	Soybean	cytosol	66.67	69.23
KRH16769	Soybean	cytosol	65.81	68.34
KRH43042	Soybean	cytosol	50.43	67.56
KRH71186	Soybean	endoplasmic reticulum	68.09	67.51
KRH28215	Soybean	cytosol, plastid, vacuole	23.08	66.94
KRG89230	Soybean	cytosol	69.23	66.76
KRH49772	Soybean	cytosol	69.8	66.22
KRH59295	Soybean	cytosol, endoplasmic reticulum	58.97	65.71
KRH50231	Soybean	cytosol	68.38	65.4
KRH76942	Soybean	cytosol	56.13	65.23
KRH04679	Soybean	nucleus, plastid	66.1	64.44
KRH57751	Soybean	nucleus	65.53	63.89
KRH28516	Soybean	cytosol	64.39	62.95
KRH08581	Soybean	mitochondrion	16.81	51.75
KRH76943	Soybean	cytosol, extracellular, plasma membrane	8.26	50.88
KRH30137	Soybean	extracellular, plasma membrane	13.39	39.17

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	EntrezGene:547968	EMBL:ACUP02004747	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G005100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0035556	InterPro:IPR000719	EnsemblPlants:KRH41015	ProteinID:KRH41015	ProteinID:KRH41015.1	InterPro:Kinase-like_dom_sf
EMBL:L19361	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24343	PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q43466	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00000A438A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:402243..406424

Molecular Weight (calculated)

40389.1 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.529

Length

351 amino acids

Sequence
(BLAST)

001: MDKYEAVKDL GAGNFGVARL MRNKETKELV AMKYIERGQK IDENVAREII NHRSLRHPNI IRFKEVVLTP THLAIVMEYA AGGELFERIC NAGRFSEDEA
101: RYFFQQLISG VHYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKL ADVWSCGVTL YVMLVGAYPF
201: EDQDDPRNFR KTIQRIMAVQ YKIPDYVHIS QDCRHLLSRI FVANPLRRIS LKEIKSHPWF LKNLPRELTE SAQAVYYQRG NPSFSIQSVE EIMKIVGEAR
301: DPPPVSRPVK GFGWDGEEDE GEEDVEEEED EEDEYDKRVK EVHASGEFQI S

Best Arabidopsis Sequence Match ( AT1G10940.1 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MKVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THLAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFR KTIQKIMAVQ YKIPDYVHIS QDCKNLLSRI FVANSLKRIT IAEIKKHSWF LKNLPRELTE TAQAAYFKKE NPTFSLQTVE EIMKIVADAK
301: TPPPVSRSIG GFGWGGNGDA DGKEEDAEDV EEEEEEVEEE EDDEDEYDKT VKEVHASGEV RIS

Arabidopsis Description

ASK1Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.