Factsheet for Solyc05g056550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc05g052620.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08590.1	Solyc01g005300.2.1	AT1G68050.1	14749489
AT5G08590.1	Solyc01g005300.2.1	AT1G68050.1	17872410
AT5G08590.1	Solyc05g052620.2.1	AT2G39940.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060263	Potato	cytosol	97.19	96.65
KRH41015	Soybean	endoplasmic reticulum	82.87	84.05
KRH59681	Soybean	endoplasmic reticulum	82.58	83.76
KRH54011	Soybean	cytosol	79.78	82.08
KRH63934	Soybean	endoplasmic reticulum	80.34	81.95
GSMUA_Achr11P...	Banana	cytosol	15.17	81.82
Solyc01g103940.2.1	Tomato	plastid	81.74	80.61
VIT_07s0031g03210.t01	Wine grape	cytosol	80.34	80.56
CDX84430	Canola	cytosol	78.37	79.26
Os04t0432000-02	Rice	cytosol	79.78	79.11
TraesCS2D01G302500.1	Wheat	cytosol, golgi	78.65	78.43
Bra038652.1-P	Field mustard	cytosol	78.65	78.43
TraesCS2B01G320500.1	Wheat	cytosol	78.65	78.43
TraesCS2A01G303900.1	Wheat	cytosol	78.65	78.43
CDY41527	Canola	cytosol	78.65	78.43
HORVU2Hr1G075470.2	Barley	cytosol	78.65	78.43
AT5G08590.1	Thale cress	cytosol	77.25	77.9
EES06943	Sorghum	cytosol	79.49	77.75
AT5G63650.1	Thale cress	cytosol	78.09	77.22
CDX69936	Canola	cytosol	78.65	76.29
GSMUA_Achr11P...	Banana	cytosol	59.55	75.99
Bra009354.1-P	Field mustard	cytosol	78.65	75.68
CDX78346	Canola	cytosol	78.09	75.14
CDX81116	Canola	cytosol	77.81	74.86
Os02t0551100-01	Rice	plasma membrane	76.69	74.79
Bra006010.1-P	Field mustard	cytosol	78.09	74.73
CDY21553	Canola	cytosol	78.65	74.27
KXG26327	Sorghum	cytosol	76.4	72.15
Solyc08g077780.2.1	Tomato	cytosol	64.89	68.14
Solyc04g074500.2.1	Tomato	cytosol	62.36	66.27
Solyc04g012160.2.1	Tomato	cytosol	62.36	64.35
Solyc02g090390.2.1	Tomato	cytosol	63.48	64.2
Solyc01g108280.2.1	Tomato	cytosol	64.89	63.81
Solyc11g010150.1.1	Tomato	cytosol	13.76	59.04
Solyc11g010130.1.1	Tomato	cytosol	37.92	58.95
Zm00001d042188_P001	Maize	plastid	25.0	44.5
KRH30137	Soybean	extracellular, plasma membrane	12.92	38.33
Zm00001d047445_P001	Maize	plastid	16.57	27.83

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719	UniProt:K4C2X9	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343
PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc05g056550.2	EnsemblPlants:Solyc05g056550.2.1	UniParc:UPI0002765925	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:65813031..65815097

Molecular Weight (calculated)

41036.9 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.536

Length

356 amino acids

Sequence
(BLAST)

001: MQNYEVVKEL GSGNFGVARL MRHKETKQLV AMKYIERGRK IDENVAREII NHRSLRHPNI IRFKEVLLTS THLGIVMEYA AGGELFDRIC QAGRFSEPEA
101: RYFFQQLISG VHYCHNMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS VLHSRPKSTV GTPAYIAPEV LSRREYDGKS ADVWSCGVTL YVMLVGGYPF
201: EDVDDPKNFR KTISRIMGVQ YKIPDYVHIS HDCKHLLSRI FVASPARRIT LKEIKNHPWF LKSLPKELTE TAQAVYYKRD NPTFSIQSIE EIMKIVSEAR
301: NPAPPSRPVP HFGWGTEEEE EVVEEEEEEE EEEDEYDKQV KQVHASGEFH IIHDDA

Best Arabidopsis Sequence Match ( AT5G63650.1 )
(BLAST)

001: MDKYEVVKDL GAGNFGVARL LRHKETKELV AMKYIERGRK IDENVAREII NHRSLRHPNI IRFKEVILTP THLAIVMEYA SGGELFERIC NAGRFSEAEA
101: RYFFQQLICG VDYCHSLQIC HRDLKLENTL LDGSPAPLLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKH ADVWSCGVTL YVMLVGGYPF
201: EDPDDPRNFR KTIQRIMAVQ YKIPDYVHIS QECRHLLSRI FVTNSAKRIT LKEIKKHPWY LKNLPKELTE PAQAAYYKRE TPSFSLQSVE DIMKIVGEAR
301: NPAPSSNAVK GFDDDEEDVE DEVEEEEEEE EEEEEEEEEE EDEYEKHVKE AHSCQEPPKA

Arabidopsis Description

SRK2HSerine/threonine-protein kinase SRK2H [Source:UniProtKB/Swiss-Prot;Acc:Q9FFP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.