Factsheet for Solyc05g052620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099290.2.1
Solyc01g104600.2.1
Solyc02g093920.2.1
Solyc03g112410.1.1
Solyc03g118540.2.1
Solyc04g080160.2.1
Solyc05g052620.2.1
Solyc05g056550.2.1
Solyc06g068930.1.1
Solyc07g042170.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	Solyc07g042170.2.1	AT1G19180.1	17637677
AT2G39940.1	Solyc12g009220.1.1	AT1G19180.1	17637677
AT2G39940.1	Solyc07g042170.2.1	AT1G19180.1	18547396
AT2G39940.1	Solyc12g009220.1.1	AT1G19180.1	18547396
AT2G39940.1	Solyc07g042170.2.1	AT1G74950.1	18547396
AT2G39940.1	Solyc12g009220.1.1	AT1G74950.1	18547396
AT2G39940.1	Solyc05g052620.2.1	AT2G39940.1	12724535
AT2G39940.1	Solyc03g118540.2.1	AT3G17860.1	17637675
AT2G39940.1	Solyc06g068930.1.1	AT3G17860.1	17637675
AT2G39940.1	Solyc03g118540.2.1	AT3G17860.1	18547396
AT2G39940.1	Solyc06g068930.1.1	AT3G17860.1	18547396
AT2G39940.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT2G39940.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT2G39940.1	Solyc01g099290.2.1	AT4G02570.1	12172031
AT2G39940.1	Solyc01g099290.2.1	AT4G02570.1	12445118
AT2G39940.1	Solyc01g099290.2.1	AT4G02570.1	12724535
AT2G39940.1	Solyc01g104600.2.1	AT4G14110.1	12724535
AT2G39940.1	Solyc05g056550.2.1	AT5G08590.1	12172031
AT2G39940.1	Solyc05g056550.2.1	AT5G08590.1	14749489
AT2G39940.1	Solyc02g093920.2.1	AT5G14250.1	12724535
AT2G39940.1	Solyc04g080160.2.1	AT5G42970.1	12724535
AT2G39940.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03380.t01	Wine grape	cytosol	72.64	73.24
KRG97777	Soybean	cytosol	70.48	72.03
KRH31107	Soybean	cytosol	70.32	71.86
KRH14993	Soybean	cytosol	66.83	70.95
KRH73146	Soybean	cytosol	68.66	70.89
AT2G39940.1	Thale cress	cytosol	67.33	68.58
Bra000156.1-P	Field mustard	cytosol	66.67	68.14
CDY24941	Canola	cytosol	66.67	68.14
CDX74819	Canola	cytosol	66.67	67.0
Bra005000.1-P	Field mustard	cytosol	67.0	67.0
CDY20501	Canola	cytosol	66.83	66.94
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	63.02	65.18
CDX93223	Canola	cytosol	63.52	64.81
GSMUA_Achr5P28930_001	Banana	cytosol	59.87	64.46
CDX93225	Canola	cytosol	63.35	64.31
CDY07041	Canola	cytosol	62.52	63.68
GSMUA_Achr9P03690_001	Banana	cytosol	63.02	63.02
Bra017044.1-P	Field mustard	cytosol	62.85	62.75
Bra017045.1-P	Field mustard	cytosol	62.69	62.27
CDY07040	Canola	cytosol	62.69	62.27
TraesCS3A01G367500.1	Wheat	cytosol	54.23	58.71
Os01t0853400-01	Rice	cytosol	57.71	58.49
HORVU3Hr1G085210.2	Barley	cytosol	57.38	58.25
TraesCS3B01G399200.1	Wheat	cytosol	57.21	58.08
TraesCS3D01G360400.2	Wheat	cytosol	57.21	57.98
Os05t0449500-01	Rice	cytosol	57.21	57.79
HORVU4Hr1G060950.3	Barley	cytosol	56.05	57.68
TraesCS4A01G091200.1	Wheat	cytosol	55.56	57.17
Os03t0265500-01	Rice	plasma membrane	55.72	57.05
CDY60996	Canola	endoplasmic reticulum, golgi	66.5	57.04
TraesCS4D01G214200.1	Wheat	cytosol	55.39	57.0
TraesCS4B01G213500.1	Wheat	cytosol	55.39	57.0
Zm00001d012338_P001	Maize	cytosol	56.22	56.88
EER95129	Sorghum	cytosol	55.56	56.68
Zm00001d042833_P001	Maize	cytosol	55.56	56.02
HORVU1Hr1G073230.1	Barley	cytosol	54.89	56.01
Zm00001d047848_P001	Maize	cytosol	54.89	56.01
TraesCS1D01G278400.1	Wheat	cytosol	54.89	55.91
EES01769	Sorghum	cytosol	55.22	55.87
Zm00001d038273_P001	Maize	cytosol	55.39	55.76
EES18318	Sorghum	cytosol	55.39	55.76
TraesCS1A01G279100.1	Wheat	cytosol	54.73	55.74
TraesCS1B01G288100.1	Wheat	cytosol	54.73	55.74
Zm00001d028543_P001	Maize	cytosol	54.56	55.67
Zm00001d010082_P001	Maize	cytosol	55.06	55.43
GSMUA_Achr8P02350_001	Banana	cytosol	15.42	54.07
Solyc06g008470.1.1	Tomato	extracellular	3.48	36.84
Solyc02g079190.2.1	Tomato	cytosol	30.51	31.35
Solyc09g074520.2.1	Tomato	cytosol	30.18	31.33
Solyc04g074980.2.1	Tomato	cytosol	29.52	28.57
Solyc06g008440.1.1	Tomato	extracellular	2.99	28.12
Solyc06g008810.2.1	Tomato	cytosol	19.07	27.32
Solyc05g009260.1.1	Tomato	extracellular	3.65	27.16
Solyc06g007840.2.1	Tomato	extracellular, plastid	3.65	26.83
Solyc06g008460.1.1	Tomato	extracellular	10.28	26.16
Solyc06g008780.1.1	Tomato	extracellular	18.74	22.78
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	4.15	21.93
Solyc06g084490.1.1	Tomato	plastid	7.63	21.9

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.7.2.1.1	Gene3D:3.80.10.10	ProteinID:AAR82925.1	EMBL:AY423550	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607
GO:GO:0009611	GO:GO:0009625	GO:GO:0009628	GO:GO:0009641	GO:GO:0009719	GO:GO:0009753
GO:GO:0009791	GO:GO:0009867	GO:GO:0009901	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0010118	GO:GO:0010218	GO:GO:0019538	GO:GO:0031146	GO:GO:0031348	GO:GO:0042742
GO:GO:0048364	GO:GO:0048443	GO:GO:0050832	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF6	UniProt:Q6TDU2	SUPFAM:SSF52047	EnsemblPlantsGene:Solyc05g052620.2	EnsemblPlants:Solyc05g052620.2.1	UniParc:UPI0000232694
SEG:seg	:	:	:	:	:

Description

Coronatine-insensitive 1 [Source:UniProtKB/TrEMBL;Acc:Q6TDU2]

Coordinates

chr5:-:62822121..62828195

Molecular Weight (calculated)

68558.9 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.168

Length

603 amino acids

Sequence
(BLAST)

001: MEERNSTRLS SSTNDTVWEC VIPYIQESRD RDAVSLVCKR WWQIDAITRK HITMALCYTA KPEQLSRRFP HLESVKLKGK PRAAMFNLIP EDWGGYVTPW
101: VMEITKSFSK LKALHFRRMI VRDSDLELLA NRRGRVLQVL KLDKCSGFST DGLLHISRSC KNLRTLLMEE SYIIEKDGEW AHELALNNTV LENLNFYMTD
201: LLQVRAEDLE LIARNCKSLV SMKISECEIT NLLGFFRAAA ALEEFGGGAF NDQPELVVEN GYNEHSGKYA ALVFPPRLCQ LGLTYLGRNE MSILFPIASR
301: LRKLDLLYAL LDTAAHCFLL QRCPNLEILE TRNVVGDRGL EVLGQYCKRL KRLRIERGAD DQEMEDEEGA VTHRGLIDLA KGCLELEYMA VYVSDITNEA
401: LEVIGTYLKN LSDFRLVLLD REERITDLPL DNGVRALLRG CHNLRRFALY VRPGGLTDVG LSYVGQYSPN VRWMLLGYVG ESDHGLLEFS KGCPSLQKLE
501: VRGCCFSERA LALATLQLKS LRYLWVQGYR ASSAGRDLLA MARPFWNIEL IPARRVIAND GNNAETVVSE HPAHILAYYS LAGQRTDFPD TVKPLDPTYL
601: LAE

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.