Factsheet for Solyc01g104600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005840.2.1
Solyc01g090290.2.1
Solyc01g091650.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc01g104600.2.1
Solyc02g021470.2.1
Solyc02g070460.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc06g076150.2.1
Solyc07g040690.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	Solyc01g090290.2.1	AT1G02090.1	10330469
AT4G14110.1	Solyc01g090290.2.1	AT1G02090.1	11742986
AT4G14110.1	Solyc01g090290.2.1	AT1G02090.1	12615944
AT4G14110.1	Solyc06g073150.2.1	AT1G22920.1	11701877
AT4G14110.1	Solyc11g017300.1.1	AT1G22920.1	11701877
AT4G14110.1	Solyc06g073150.2.1	AT1G22920.1	11742986
AT4G14110.1	Solyc11g017300.1.1	AT1G22920.1	11742986
AT4G14110.1	Solyc07g040690.2.1	AT1G64280.1	19490895
AT4G14110.1	Solyc06g073150.2.1	AT1G71230.1	11742986
AT4G14110.1	Solyc11g017300.1.1	AT1G71230.1	11742986
AT4G14110.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT4G14110.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT4G14110.1	Solyc01g005840.2.1	AT3G13550.1	11877375
AT4G14110.1	Solyc01g102560.2.1	AT3G56150.1	11029466
AT4G14110.1	Solyc01g102570.2.1	AT3G56150.1	11029466
AT4G14110.1	Solyc01g102590.2.1	AT3G56150.1	11029466
AT4G14110.1	Solyc01g102600.2.1	AT3G56150.1	11029466
AT4G14110.1	Solyc06g076150.2.1	AT3G56150.1	11029466
AT4G14110.1	Solyc01g091650.2.1	AT3G61140.1	11701877
AT4G14110.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT4G14110.1	Solyc01g091650.2.1	AT3G61140.1	9811788
AT4G14110.1	Solyc01g104600.2.1	AT4G14110.1	12615944
AT4G14110.1	Solyc02g093920.2.1	AT5G14250.1	11742986
AT4G14110.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT4G14110.1	Solyc04g080160.2.1	AT5G42970.1	12615944
AT4G14110.1	Solyc02g021470.2.1	AT5G46210.1	16844902
AT4G14110.1	Solyc02g070460.2.1	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076584	Potato	cytosol	95.43	95.43
KRH43983	Soybean	cytosol	74.11	74.11
KRH10462	Soybean	cytosol	73.1	73.1
VIT_12s0055g00390.t01	Wine grape	cytosol	72.08	72.08
Bra038444.1-P	Field mustard	cytosol	69.54	69.54
CDY01192	Canola	cytosol	69.04	69.04
AT4G14110.1	Thale cress	cytosol	68.53	68.53
CDY12369	Canola	cytosol	68.53	68.53
CDY27125	Canola	cytosol	67.51	67.51
KRH33363	Soybean	cytosol	61.93	67.03
GSMUA_Achr2P20500_001	Banana	cytosol	65.99	65.99
Os04t0428900-01	Rice	cytosol	63.96	64.29
CDY12734	Canola	cytosol	69.54	62.84
Bra032760.1-P	Field mustard	cytosol	69.54	61.99
TraesCS2A01G301900.1	Wheat	golgi	60.91	61.22
OQU81583	Sorghum	cytosol	58.88	59.18
Zm00001d003685_P001	Maize	extracellular	58.38	58.67
Zm00001d025407_P001	Maize	cytosol	58.38	58.67
HORVU2Hr1G074740.2	Barley	cytosol	56.85	57.14
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	60.91	54.05
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.39	36.22

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.3.3.1.8	InterPro:COP9_CSN8	InterPro:CSN8_PSD8_EIF3K	GO:GO:0000338	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009416	GO:GO:0009628	GO:GO:0009719	GO:GO:0009753
GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	UniProt:K4B234
InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR13339	EnsemblPlantsGene:Solyc01g104600.2	EnsemblPlants:Solyc01g104600.2.1
UniParc:UPI00027689BF	:	:	:	:	:

Description

COP9 signalosome complex subunit 8 [Source:Projected from Arabidopsis thaliana (AT4G14110) UniProtKB/Swiss-Prot;Acc:P43255]

Coordinates

chr1:+:93048472..93052788

Molecular Weight (calculated)

22577.8 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.232

Length

197 amino acids

Sequence
(BLAST)

001: MDTSQLNEAL ASSFYDKIAD ICDDLMLQGA AEGIEFQDEW PYAIHLLGHI YSNDINSARF LWKKIPAAVK EARPEVVAVW RIGQKLWTRD YVGVHEAIRG
101: FSWSPEIQPF VASFAELYRK RMFELLLSAY STISTQDSAH FLGMNENDAT NYVLQQGWAL DSASQMLTVK KQAVLTEQKL DPSKLQRLTE YVFHLEH

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.