Factsheet for Solyc02g021470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18363785
plastid: 18363785

gfp PMID: 18363785 doi

S Wang, J Liu, Y Feng, X Niu, J Giovannoni, Y Liu

Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005840.2.1
Solyc01g103010.2.1
Solyc01g104600.2.1
Solyc02g021650.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1
Solyc06g073150.2.1
Solyc08g074370.2.1
Solyc09g010620.1.1
Solyc09g031610.2.1
Solyc11g017300.1.1
Solyc12g005950.1.1
Solyc12g088340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	Solyc12g088340.1.1	AT1G19750.1	20622147
AT5G46210.1	Solyc06g073150.2.1	AT1G71230.1	16844902
AT5G46210.1	Solyc11g017300.1.1	AT1G71230.1	16844902
AT5G46210.1	Solyc01g103010.2.1	AT2G02560.1	16844902
AT5G46210.1	Solyc12g005950.1.1	AT2G32950.1	16844902
AT5G46210.1	Solyc01g005840.2.1	AT3G13550.1	16844902
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	16792691
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	16844902
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	18223036
AT5G46210.1	Solyc02g021650.2.1	AT4G05420.1	18551167
AT5G46210.1	Solyc01g104600.2.1	AT4G14110.1	16844902
AT5G46210.1	Solyc09g010620.1.1	AT4G15900.1	18223036
AT5G46210.1	Solyc02g021650.2.1	AT4G21100.1	16792691
AT5G46210.1	Solyc08g074370.2.1	AT4G31160.1	18552200
AT5G46210.1	Solyc02g093920.2.1	AT5G14250.1	16844902
AT5G46210.1	Solyc04g080160.2.1	AT5G42970.1	16844902
AT5G46210.1	Solyc09g031610.2.1	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21073	Soybean	cytosol	35.03	96.15
VIT_10s0003g03710.t01	Wine grape	cytosol	90.96	89.03
KRH11182	Soybean	cytosol, plastid	88.28	87.94
KRH58640	Soybean	cytosol	85.48	86.58
KRH42547	Soybean	cytosol	83.95	85.7
Solyc02g070460.2.1	Tomato	plastid	87.52	85.66
CDY33461	Canola	cytosol	81.4	83.97
Bra025031.1-P	Field mustard	cytosol	81.15	83.82
CDX77644	Canola	cytosol	81.4	83.31
TraesCS5A01G425300.1	Wheat	cytosol	75.16	82.98
CDY43957	Canola	cytosol	81.4	82.35
GSMUA_Achr4P22850_001	Banana	cytosol	83.82	81.94
CDX87735	Canola	cytosol	81.15	81.67
Bra022023.1-P	Field mustard	plastid	81.53	81.53
KRH21072	Soybean	plastid	50.06	81.37
CDY03235	Canola	plastid	81.4	80.89
CDY35152	Canola	plastid	80.89	80.79
Bra017569.1-P	Field mustard	plastid	80.76	80.66
AT5G46210.1	Thale cress	cytosol	81.02	80.3
TraesCS5B01G427400.1	Wheat	cytosol	78.98	77.21
TraesCS5D01G433700.3	Wheat	cytosol, plastid	78.98	74.7
EER93338	Sorghum	plastid	79.24	74.58
HORVU5Hr1G103580.2	Barley	plastid	79.11	74.55
Zm00001d034361_P001	Maize	cytosol, plastid	78.98	74.52
GSMUA_Achr7P01270_001	Banana	cytosol	83.06	74.51
Zm00001d013116_P002	Maize	plastid	79.24	72.33
Solyc01g010820.2.1	Tomato	cytosol	38.85	41.55
Solyc02g087900.2.1	Tomato	cytosol	37.58	40.25
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	6.62	38.81
Solyc06g084520.2.1	Tomato	cytosol	31.46	33.38
Solyc01g067210.2.1	Tomato	cytosol	24.08	33.22
Solyc09g074680.2.1	Tomato	cytosol	30.96	32.84
Solyc01g067140.1.1	Tomato	cytosol	16.69	32.43
Solyc01g067100.2.1	Tomato	cytosol	30.06	31.81
Solyc09g010050.1.1	Tomato	cytosol	28.92	30.88
Solyc06g008710.1.1	Tomato	cytosol	28.03	29.61
Solyc05g018040.1.1	Tomato	cytosol	9.04	28.29
Solyc01g067270.2.1	Tomato	cytosol	6.5	22.27
Solyc01g099290.2.1	Tomato	cytosol	6.88	20.3
Solyc01g067120.2.1	Tomato	cytosol	4.08	19.05
Solyc01g067200.1.1	Tomato	cytosol	3.82	15.62
Solyc06g008080.1.1	Tomato	cytosol	5.99	15.36
Solyc01g067260.2.1	Tomato	plastid	3.95	14.83

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	InterPro:Cullin_CS
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787
GO:GO:0061630	GO:GO:0080008	InterPro:IPR016158	InterPro:IPR036388	UniProt:K4B4Z7	PFAM:PF00888
PFAM:PF10557	ScanProsite:PS01256	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27	SMART:SM00182
SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc02g021470.2	EnsemblPlants:Solyc02g021470.2.1
UniParc:UPI0002768822	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:22844577..22875330

Molecular Weight (calculated)

90195.9 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.379

Length

785 amino acids

Sequence
(BLAST)

001: MKKAKSQALP CSIDSKNGQH VHFSSDIDDP SGNSPMMEDC NIDSSSVAGG VTANLSRKKA TPPQPAKKLV IKLLKAKPTL PTNFEENTWA TLKSAISAIF
101: LKQPDPCDLE KLYQAVNDLC LHKMGGNLYQ RIEKECESHI AAALRSLVGQ SEDLVVFLSL VERCWQDFCD QMLMIRGIAL YLDRTYVKQT PNVRSLWDMG
201: LQLFRKHLSL ASEVEHKTVF GLLQMIETER LGEAVDRTLL NHLLKMFTAL GIYAESFEKP FLERTSEFYA AEGVKYMQQS DVPDYLKHVE VRLHEEHDRC
301: LLYLDASTRK PLIATAERQL LEQHISAILD KGFTVLMDGN RIEDLQRMYM LFCRVNDLES LRQALSSYIR RTGQSIVLDE EKDKDMVPSL LEFKASLDTI
401: WEESFSKNEA FSNTIKDAFE HLINIRQNRP AELIAKFLDE KLRAGNKGTS EEELEGTLDK VLVLFRFIQG KDVFEAFYKK DLAKRLLLGK SASIDAEKSM
501: ISKLKTECGS QFTNKLEGMF KDIELSKEIN ESFKQSSQAR TKLPTGIEMS VHVLTMGYWP TYPPMDVRLP HELNVYQDIF KEFYLSKYSG RRLMWQNSLG
601: HCVLKAEYPK GKKELAVSLF QTVVLMLFND AENLSFQDIK EATGIEDKEL RRTLQSLACG KVRVLQKIPK GRDVEDDDTF VFNDQFTAPL YRIKVNAIQM
701: KETVEENTST TERVFQDRQY QVDAAIVRIM KTRKVLSHTL LITELFQQLK FPIKPADLKK RIESLIDREY LERDKNNPQI YNYLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.