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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400030158 Potato cytosol 97.13 97.13
VIT_18s0001g09100.t01 Wine grape nucleus 73.51 72.71
KRH61410 Soybean mitochondrion 69.32 69.78
KRH52095 Soybean nucleus 67.55 68.46
AT1G27840.3 Thale cress nucleus 67.33 67.63
AT1G19750.1 Thale cress mitochondrion 65.56 66.0
CDX84902 Canola plastid 64.24 64.67
Bra032850.1-P Field mustard plastid 64.24 64.67
CDY27634 Canola plastid 64.02 64.44
Os02t0307200-01 Rice mitochondrion 26.49 62.83
Zm00001d042794_P003 Maize nucleus 60.49 61.57
GSMUA_Achr6P19320_001 Banana nucleus 61.59 61.18
KXG33728 Sorghum nucleus 60.71 61.11
TraesCS3B01G403200.2 Wheat nucleus 60.04 60.04
TraesCS3A01G371000.2 Wheat nucleus 59.82 59.82
TraesCS3D01G364100.2 Wheat nucleus 59.6 59.6
HORVU3Hr1G084470.1 Barley plastid 22.96 53.06
Protein Annotations
MapMan:14.6.2.1Gene3D:2.130.10.10InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986UniProt:K4DGQ5PFAM:PF00400PRINTS:PR00320
ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR22850PANTHER:PTHR22850:SF130SMART:SM00320
SUPFAM:SSF50978EnsemblPlantsGene:Solyc12g088340.1EnsemblPlants:Solyc12g088340.1.1UniParc:UPI000276AB4AInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg::
Description
No Description!
Coordinates
chr12:+:63764969..63770884
Molecular Weight (calculated)
49994.0 Da
IEP (calculated)
8.791
GRAVY (calculated)
-0.412
Length
453 amino acids
Sequence
(BLAST)
001: MWKEIGDREF GKLRPNLFSN RIKSARIASI QLSNYKDIIS PHRGSVNSLQ VDLTEGRYLL SSASDASVAV YDVQRATDYD ESGLIAKHKH ILLVDKQHEQ
101: GHKYAISTAN WYPIDTGLFI TGSYDHYVNV WDTNTTQVVV NFKMPGKVYN TAMSPVATSH MLIAAGTEDV QVRLCDISSG AFAHTLSGHR DGVMSVEWSA
201: SSEWVLITGG CDGAIRFWDI RRAGCFRVLD QSHNQLGRRP SLLTRSTASK GSTLKPSSGG PNSSAKGRPS QKKMGNSASI KHSAIARQVR GFGKQRLHPG
301: MLSSQDRATA HYGAVNGLKV TNDGMYLLSA GSDSRLRLWD IDTGCNTLVN FETSRLQATK ATQLAISHDS TLVFVPCMST TKAFDLWSGK KMMDLRGHYE
401: NVNCCLYNSL DQELLTGGND RKILVWSPSR TTTEELEGRE GQAFAIDQDN WSD
Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)
001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD
Arabidopsis Description
ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.