Factsheet for Os02t0307200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042794_P003	Maize	nucleus	88.48	37.98
KXG33728	Sorghum	nucleus	86.39	36.67
TraesCS3B01G403200.2	Wheat	nucleus	86.91	36.64
TraesCS3D01G364100.2	Wheat	nucleus	85.86	36.2
TraesCS3A01G371000.2	Wheat	nucleus	85.34	35.98
GSMUA_Achr6P19320_001	Banana	nucleus	70.16	29.39
AT1G27840.3	Thale cress	nucleus	65.97	27.94
AT1G19750.1	Thale cress	mitochondrion	64.92	27.56
CDY27634	Canola	plastid	64.4	27.33
CDX84902	Canola	plastid	63.87	27.11
Bra032850.1-P	Field mustard	plastid	63.87	27.11
VIT_18s0001g09100.t01	Wine grape	nucleus	63.87	26.64
PGSC0003DMT400030158	Potato	cytosol	62.83	26.49
Solyc12g088340.1.1	Tomato	cytosol	62.83	26.49
KRH61410	Soybean	mitochondrion	60.73	25.78
KRH52095	Soybean	nucleus	59.69	25.5
HORVU3Hr1G084470.1	Barley	plastid	2.62	2.55

Protein Annotations

MapMan:14.6.2.1	Gene3D:2.130.10.10	UniProt:A0A0P0VI72	ProteinID:BAS78299.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os02g0307200	EnsemblPlants:Os02t0307200-01
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000393C163	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

OsWD40-42Similar to transducin family protein / WD-40 repeat family protein. (Os02t0307200-01)

Coordinates

chr2:+:12054771..12057601

Molecular Weight (calculated)

21097.1 Da

IEP (calculated)

9.125

GRAVY (calculated)

-0.158

Length

191 amino acids

Sequence
(BLAST)

001: MWCEAVRRRE RGELGARRFE TAARARRTAS LALSNRKEFT TPHNGAVNSL QVDLIERRYL LSGASDGSAA IFDVQNAIEY EAGFIAKHRS ILLVDKQHEN
101: GHKFAVSMAV WYPVDTGLFV TASFDQYVKV WDTNSTQVVM DFKMPGKVYS AAMSPIATTH MLIATGSADV QVRLCDIASG AFTHTLSGHR G

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.