Factsheet for TraesCS3D01G364100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G371000.2	Wheat	nucleus	98.45	98.45
TraesCS3B01G403200.2	Wheat	nucleus	97.79	97.79
HORVU3Hr1G084470.1	Barley	plastid	39.29	90.82
Os02t0307200-01	Rice	mitochondrion	36.2	85.86
Zm00001d042794_P003	Maize	nucleus	80.35	81.8
KXG33728	Sorghum	nucleus	80.57	81.11
GSMUA_Achr6P19320_001	Banana	nucleus	64.24	63.82
VIT_18s0001g09100.t01	Wine grape	nucleus	61.59	60.92
PGSC0003DMT400030158	Potato	cytosol	60.04	60.04
Solyc12g088340.1.1	Tomato	cytosol	59.6	59.6
KRH61410	Soybean	mitochondrion	58.28	58.67
KRH52095	Soybean	nucleus	57.84	58.61
AT1G27840.3	Thale cress	nucleus	57.62	57.87
Bra032850.1-P	Field mustard	plastid	57.17	57.56
CDY27634	Canola	plastid	56.95	57.33
CDX84902	Canola	plastid	56.51	56.89
AT1G19750.1	Thale cress	mitochondrion	56.07	56.44

Protein Annotations

MapMan:14.6.2.1	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS3D01G364100	EnsemblPlants:TraesCS3D01G364100.2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:477900895..477903567

Molecular Weight (calculated)

50762.7 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.504

Length

453 amino acids

Sequence
(BLAST)

001: MWWEEVRRRE RGELRARRFE ALARSRRAAS LALSNRKEIA TPHLGAVNSL QVDLTEGRYL LSGASDGSAA VFDLKDATEY EAGFIAKHRS ILLVDRQHQH
101: GHKFTVSKAI WYPVDTGLFV TASFDNYVKV WDTNSTQVVM DFKMPGKVYS AAMSPIATTH MLIATGSADV QIRLCDIASG AFTHTLSGHH DGIMSLEWST
201: SSEWILMSGG CDGAIRFWDI RRAGCFLILD QLRSQLGRRP PIIDSTTDNQ HQKNLGRSSS SKSYSVQQRT GNHKKQSKGL RKSLTMVRGH TQQKVHPGMS
301: SSQNRKTAHY GAVTGLRTTT DGMHLLSSGS DSRLRLWDID SGCNTLVNFE AMRLQTSKPL QLAVTDDPSL VFIPCMSSIK AYNTWSGTTF QTFRGHYDHV
401: NCCYYNSQDQ ELYTGSNDRQ ILVWSPSTPA LTEMEDDDKR QEGFAADEDN WSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.