CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52095	Soybean	nucleus	94.22	94.85
VIT_18s0001g09100.t01	Wine grape	nucleus	73.56	72.27
PGSC0003DMT400030158	Potato	cytosol	71.11	70.64
Solyc12g088340.1.1	Tomato	cytosol	69.78	69.32
AT1G27840.3	Thale cress	nucleus	66.89	66.74
CDX84902	Canola	plastid	65.56	65.56
AT1G19750.1	Thale cress	mitochondrion	65.33	65.33
Bra032850.1-P	Field mustard	plastid	65.11	65.11
CDY27634	Canola	plastid	64.89	64.89
GSMUA_Achr6P19320_001	Banana	nucleus	62.44	61.62
Os02t0307200-01	Rice	mitochondrion	25.78	60.73
KXG33728	Sorghum	nucleus	60.0	60.0
Zm00001d042794_P003	Maize	nucleus	58.44	59.1
TraesCS3B01G403200.2	Wheat	nucleus	59.11	58.72
TraesCS3D01G364100.2	Wheat	nucleus	58.67	58.28
TraesCS3A01G371000.2	Wheat	nucleus	58.44	58.06
HORVU3Hr1G084470.1	Barley	plastid	23.33	53.57

Protein Annotations

EntrezGene:100815581	MapMan:14.6.2.1	Gene3D:2.130.10.10	EMBL:ACUP02002162	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_04G045700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JTR0	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	ProteinID:KRH61409.1	EnsemblPlants:KRH61410	ProteinID:KRH61410	ProteinID:KRH61410.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C11B4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3659202..3665348

Molecular Weight (calculated)

49950.0 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.469

Length

450 amino acids

Sequence
(BLAST)

001: MHKQTHRHVW KRIRDREAGK LRANHFANRI KSNRISQLQL SNHKDIVSPH KGAINSLQVD STEGRYLLSA ASDASVAVYD VQRPTVYEAG GGGGGGISKH
101: SSIFVVDKQH QQGHKYAVST AIWYPIDTGL FVTGSYDHHI NVWDTNTTQV VVNFKMPGKV HRAAMSNLST SHMLIAAATE DVQVRLCDIA SGAFAHTLSG
201: HRDGVMTVEW SNSSEWVLVT GGCDGAIRFW DIRRAGCFQV LDQSQTQLGR RPPILKRSMI TKDSSTKLRA AQKKHANGSG SRQQPIGRVP SKGPMKQRLH
301: PGMLSTQDRA TAHYGAVTGL KATEDGMYLL SAGSDSRLRL WDVESSCNTL VNFETVRLQI NKPLQLATTQ DSALVFVPCM RSVKAFDMWS GNTYTILRGH
401: YECVNSCWFN QHDQELYTGG NDRQILVWSP ARSIADEMEG TAEDQDNWSS

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.