Factsheet for AT1G27840.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G19750.1	Thale cress	mitochondrion	92.46	92.67
Bra032850.1-P	Field mustard	plastid	87.36	87.56
CDY27634	Canola	plastid	86.92	87.11
CDX84902	Canola	plastid	85.37	85.56
PGSC0003DMT400030158	Potato	cytosol	68.51	68.21
Solyc12g088340.1.1	Tomato	cytosol	67.63	67.33
VIT_18s0001g09100.t01	Wine grape	nucleus	68.07	67.03
KRH61410	Soybean	mitochondrion	66.74	66.89
Os02t0307200-01	Rice	mitochondrion	27.94	65.97
KRH52095	Soybean	nucleus	64.52	65.1
GSMUA_Achr6P19320_001	Banana	nucleus	61.86	61.18
Zm00001d042794_P003	Maize	nucleus	58.09	58.88
KXG33728	Sorghum	nucleus	58.31	58.44
TraesCS3B01G403200.2	Wheat	nucleus	58.31	58.06
TraesCS3A01G371000.2	Wheat	nucleus	57.87	57.62
TraesCS3D01G364100.2	Wheat	nucleus	57.87	57.62
HORVU3Hr1G084470.1	Barley	plastid	21.06	48.47

Protein Annotations

MapMan:14.6.2.1	EntrezGene:839677	ProteinID:AEE30883.1	ArrayExpress:AT1G27840	EnsemblPlantsGene:AT1G27840	RefSeq:AT1G27840
TAIR:AT1G27840	RefSeq:AT1G27840-TAIR-G	EnsemblPlants:AT1G27840.3	TAIR:AT1G27840.3	Symbol:ATCSA-1	Unigene:At.17206
UniProt:F4HUT3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR017986	RefSeq:NP_001031099.1	PFAM:PF00400	PO:PO:0000293
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00005DBF58	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]

Coordinates

chr1:-:9693008..9696364

Molecular Weight (calculated)

49755.7 Da

IEP (calculated)

8.802

GRAVY (calculated)

-0.384

Length

451 amino acids

Sequence
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKVAFGMWSG RTTLMLRGHY
401: ESVNTCCFNS NDQELYTSGS DRQILVWSPG GTVEDEMVQD EVAEDKDNWS D

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.