CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61410	Soybean	mitochondrion	94.85	94.22
VIT_18s0001g09100.t01	Wine grape	nucleus	72.71	70.96
PGSC0003DMT400030158	Potato	cytosol	69.8	68.87
Solyc12g088340.1.1	Tomato	cytosol	68.46	67.55
AT1G27840.3	Thale cress	nucleus	65.1	64.52
CDX84902	Canola	plastid	64.88	64.44
Bra032850.1-P	Field mustard	plastid	64.43	64.0
CDY27634	Canola	plastid	64.21	63.78
AT1G19750.1	Thale cress	mitochondrion	63.53	63.11
GSMUA_Achr6P19320_001	Banana	nucleus	61.74	60.53
Os02t0307200-01	Rice	mitochondrion	25.5	59.69
KXG33728	Sorghum	nucleus	59.73	59.33
Zm00001d042794_P003	Maize	nucleus	58.17	58.43
TraesCS3B01G403200.2	Wheat	nucleus	59.06	58.28
TraesCS3D01G364100.2	Wheat	nucleus	58.61	57.84
TraesCS3A01G371000.2	Wheat	nucleus	58.39	57.62
HORVU3Hr1G084470.1	Barley	plastid	23.94	54.59

Protein Annotations

EntrezGene:100790433	MapMan:14.6.2.1	EMBL:ACUP02003404	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_06G046400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1K866	InterPro:IPR001680	InterPro:IPR017986	EnsemblPlants:KRH52095
ProteinID:KRH52095	ProteinID:KRH52095.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C3390
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:3515959..3520017

Molecular Weight (calculated)

49800.8 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.432

Length

447 amino acids

Sequence
(BLAST)

001: MHKQTHTHVW KRIRDREAGK LHASHFANRI KWNRISQLQL SNHKDIVSPH KGAINSLQID STEGRYLLSA ASDASVAVYD VQRPTVYEAG GVISKHSSIF
101: VVDKQHQQAH KYAVSSAIWY PIDTGLFVTG SYDHHINVWD TNTTQVVVNF KMPGKVHRAA MSNLSTSHML IAAATEDVQV RLCDIASGAF AHTLSGHRDG
201: VMTVEWSNSS EWVLVTGGCD GAIRFWDIRR AGCFQVLDQS RTQLGRRPTI LNHSMITKDS STKLSAAQKK HANGSGSRQQ LIGRVPSKGP MKQKLHPGML
301: STQDRATAHY GAVTGLKATE DGMYLLSAGS DSRLRLWDVE SGCDTLVNFE TVRLQVNKPL QLATTQDSTL VFVPCMRSVK AFDMWSGNTY TILRGHYECV
401: NSCWFNQQDQ ELYTGGNDRQ ILVWSPARSM ADEMDEGPAE DQDNWSS

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.