Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27840.3 | Thale cress | nucleus | 92.67 | 92.46 |
| Bra032850.1-P | Field mustard | plastid | 85.33 | 85.33 |
| CDY27634 | Canola | plastid | 84.89 | 84.89 |
| CDX84902 | Canola | plastid | 84.22 | 84.22 |
| PGSC0003DMT400030158 | Potato | cytosol | 66.67 | 66.23 |
| Solyc12g088340.1.1 | Tomato | cytosol | 66.0 | 65.56 |
| KRH61410 | Soybean | mitochondrion | 65.33 | 65.33 |
| VIT_18s0001g09100.t01 | Wine grape | nucleus | 66.44 | 65.28 |
| Os02t0307200-01 | Rice | mitochondrion | 27.56 | 64.92 |
| KRH52095 | Soybean | nucleus | 63.11 | 63.53 |
| GSMUA_Achr6P19320_001 | Banana | nucleus | 60.0 | 59.21 |
| Zm00001d042794_P003 | Maize | nucleus | 56.44 | 57.08 |
| KXG33728 | Sorghum | nucleus | 56.89 | 56.89 |
| TraesCS3A01G371000.2 | Wheat | nucleus | 56.67 | 56.29 |
| TraesCS3B01G403200.2 | Wheat | nucleus | 56.67 | 56.29 |
| TraesCS3D01G364100.2 | Wheat | nucleus | 56.44 | 56.07 |
| HORVU3Hr1G084470.1 | Barley | plastid | 19.78 | 45.41 |
Protein Annotations
| MapMan:14.6.2.1 | EntrezGene:838564 | ProteinID:AEE29894.1 | ProteinID:ANM58248.1 | ArrayExpress:AT1G19750 | EnsemblPlantsGene:AT1G19750 |
| RefSeq:AT1G19750 | TAIR:AT1G19750 | RefSeq:AT1G19750-TAIR-G | EnsemblPlants:AT1G19750.1 | TAIR:AT1G19750.1 | UniProt:F4HQX6 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR017986 | RefSeq:NP_001320698.1 | RefSeq:NP_173405.2 |
| PFAM:PF00400 | PO:PO:0000293 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR22850 | PANTHER:PTHR22850:SF130 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000162E1E | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HQX6]
Coordinates
chr1:+:6826913..6830321
Molecular Weight (calculated)
49999.0 Da
IEP (calculated)
9.260
GRAVY (calculated)
-0.408
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MWKAFKDRET GRFRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVKRATDYE ASGLIAKHKC IFTVRKQHEN
101: GHKYAISSAI WYPIDTGMFI TGSFDHYVKV WDTNTSQVVV DFKMPGKVYR TAMSSMAMSH TLIAAGTDDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD NSQTQLGVRP PILKRPAVSS KFFSAAKSSL GDQNWLKTLQ SKHTGSQSVK GSSSEKPSVE KSRQKRIHPG
301: MLSTLDRATA HYGVVTGLKA TNDGMYLLSA GSYSRIRLWD IESGRNTLVN FETGRIQTDR AIQLDTSDDP ALVFVPCMKT VKGFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGAD RQIIVWSPGG SVEDEMAQGE VAEDKDNWSD
101: GHKYAISSAI WYPIDTGMFI TGSFDHYVKV WDTNTSQVVV DFKMPGKVYR TAMSSMAMSH TLIAAGTDDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD NSQTQLGVRP PILKRPAVSS KFFSAAKSSL GDQNWLKTLQ SKHTGSQSVK GSSSEKPSVE KSRQKRIHPG
301: MLSTLDRATA HYGVVTGLKA TNDGMYLLSA GSYSRIRLWD IESGRNTLVN FETGRIQTDR AIQLDTSDDP ALVFVPCMKT VKGFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGAD RQIIVWSPGG SVEDEMAQGE VAEDKDNWSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.