Factsheet for GSMUA_Achr6P19320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0307200-01	Rice	mitochondrion	29.39	70.16
VIT_18s0001g09100.t01	Wine grape	nucleus	65.79	65.5
Zm00001d042794_P003	Maize	nucleus	63.82	65.39
TraesCS3B01G403200.2	Wheat	nucleus	64.47	64.9
TraesCS3A01G371000.2	Wheat	nucleus	64.04	64.46
TraesCS3D01G364100.2	Wheat	nucleus	63.82	64.24
KXG33728	Sorghum	nucleus	62.5	63.33
PGSC0003DMT400030158	Potato	cytosol	62.06	62.47
KRH61410	Soybean	mitochondrion	61.62	62.44
AT1G27840.3	Thale cress	nucleus	61.18	61.86
KRH52095	Soybean	nucleus	60.53	61.74
Solyc12g088340.1.1	Tomato	cytosol	61.18	61.59
CDX84902	Canola	plastid	60.09	60.89
Bra032850.1-P	Field mustard	plastid	60.09	60.89
CDY27634	Canola	plastid	59.65	60.44
AT1G19750.1	Thale cress	mitochondrion	59.21	60.0
HORVU3Hr1G084470.1	Barley	plastid	23.03	53.57

Protein Annotations

MapMan:14.6.2.1	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G19320_001	EnsemblPlants:GSMUA_Achr6P19320_001	EnsemblPlants:GSMUA_Achr6T19320_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0T8D0	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295B0C5	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Putative DNA excision repair protein ERCC-8 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19320_001]

Coordinates

chr6:+:13578113..13585166

Molecular Weight (calculated)

50416.8 Da

IEP (calculated)

8.698

GRAVY (calculated)

-0.346

Length

456 amino acids

Sequence
(BLAST)

001: MWKEVRDREA GKLPPITFAS RVRSRRVSAL GLSNHKEIVS PHHGAVNALQ VDLTEGRYLL SGASDGSAAV YDIQRATDYE EGLIARHRSL FVVDKQHEYG
101: HKFAISAAIW YPVDTGLFVT GSFDHFVKVW DTNTTQGVMD FKMPGKVYGT AMSSVAKAHM LIATGSADVQ VRLCDIASGA FTHTLSGHRD GVMTLEWSTC
201: SEWILMTGGR DGAIRFWDIR RAGCFRVLDQ SQCQLGRRPP FLENTSKGIV ARTSLAGSSS LANKSVSKKK TALGNGMKQS QALRKPQNLL RTPVRQRSHP
301: GMSSSHDRAT AHYGAVTGLK ASGDGMYLLS SGSDAQLRLW DIESGLNILA KYEEMRPQTT KSLHLALNQD SSLVFVPCMA TVKACDVWSG LTLQTFRGHY
401: ELVNCCYFNL QDQELYTGSN DRQILVWSPP SAIINDLEED NRKEGKFSAD KDNWSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.