Factsheet for HORVU3Hr1G084470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G403200.2	Wheat	nucleus	91.84	39.74
TraesCS3A01G371000.2	Wheat	nucleus	91.84	39.74
TraesCS3D01G364100.2	Wheat	nucleus	90.82	39.29
Zm00001d042794_P003	Maize	nucleus	71.94	31.69
KXG33728	Sorghum	nucleus	71.94	31.33
KRH52095	Soybean	nucleus	54.59	23.94
VIT_18s0001g09100.t01	Wine grape	nucleus	55.1	23.58
KRH61410	Soybean	mitochondrion	53.57	23.33
PGSC0003DMT400030158	Potato	cytosol	53.57	23.18
GSMUA_Achr6P19320_001	Banana	nucleus	53.57	23.03
Solyc12g088340.1.1	Tomato	cytosol	53.06	22.96
AT1G27840.3	Thale cress	nucleus	48.47	21.06
Bra032850.1-P	Field mustard	plastid	47.96	20.89
CDY27634	Canola	plastid	47.45	20.67
CDX84902	Canola	plastid	47.45	20.67
AT1G19750.1	Thale cress	mitochondrion	45.41	19.78
Os02t0307200-01	Rice	mitochondrion	2.55	2.62

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287M0N4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU3Hr1G084470	EnsemblPlants:HORVU3Hr1G084470.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B462CC5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:607939786..607940801

Molecular Weight (calculated)

22111.2 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.576

Length

196 amino acids

Sequence
(BLAST)

001: LQCIYIFCLE QDQKKLGRSS SSKSYSVQQR TANRKKQSKA LHKSLTMVRG HTQQKMHPGM SSSQNHKTAH YGAVTGLRTT TDGMHLLSSG SDSRLRLWDI
101: DSGCNTLVNF EAMRLQTSKP LQLAVTDDPS LVFIPCMSSI KAYNTWSGTT FQTFRGHYDH VNCCYYNSQD QELYTGSNDR QILVWSPSTP ALTEMV

Best Arabidopsis Sequence Match ( AT1G27840.2 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE AVVDFKMPGK VYRTAMSSMA
101: MSHTLIAAGT EDVQVRLCDI ASGAFSHTLS GHRDGVMSVE WSTSSEWVLY TGGCDGAIRF WDIRRAGCFR VLDQSQTQLG FRPPILKRTA VGSKLSSVAK
201: SSLGGQNRLK TLQSKQTGSQ SVKGSSSAKA SVEKSRQKRI HPGMLSTLDR ATAHYGAVTG LKATNDGMYL LSAGSDSRIR LWDIESGRNT LVNFETGRIQ
301: TNKGIQLDTS DDPALVFVPC MKTVKAFGMW SGRTTLMLRG HYESVNTCCF NSNDQELYTS GSDRQILVWS PGGTVEDEMV QDEVAEDKDN WSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.