Factsheet for Zm00001d042794_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33728	Sorghum	nucleus	91.91	90.89
Os02t0307200-01	Rice	mitochondrion	37.98	88.48
TraesCS3B01G403200.2	Wheat	nucleus	82.02	80.57
TraesCS3D01G364100.2	Wheat	nucleus	81.8	80.35
TraesCS3A01G371000.2	Wheat	nucleus	81.8	80.35
HORVU3Hr1G084470.1	Barley	plastid	31.69	71.94
GSMUA_Achr6P19320_001	Banana	nucleus	65.39	63.82
PGSC0003DMT400030158	Potato	cytosol	61.8	60.71
Solyc12g088340.1.1	Tomato	cytosol	61.57	60.49
VIT_18s0001g09100.t01	Wine grape	nucleus	62.25	60.48
KRH61410	Soybean	mitochondrion	59.1	58.44
KRH52095	Soybean	nucleus	58.43	58.17
AT1G27840.3	Thale cress	nucleus	58.88	58.09
Bra032850.1-P	Field mustard	plastid	57.75	57.11
CDY27634	Canola	plastid	57.53	56.89
CDX84902	Canola	plastid	57.53	56.89
AT1G19750.1	Thale cress	mitochondrion	57.08	56.44

Protein Annotations

MapMan:14.6.2.1	Gene3D:2.130.10.10	UniProt:A0A1D6N6S7	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM36300.1	ProteinID:ONM36302.1
ProteinID:ONM36305.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0008459416	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d042794	EnsemblPlants:Zm00001d042794_P003
EnsemblPlants:Zm00001d042794_T003	SEG:seg	:	:	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr3:-:179902053..179907809

Molecular Weight (calculated)

49469.4 Da

IEP (calculated)

8.222

GRAVY (calculated)

-0.347

Length

445 amino acids

Sequence
(BLAST)

001: MWLEEVRRRE RGELRARRFE AAARACRTAS LALSNRKEFV TPHHGAVNSL QVDLTEGRYL LSGASDGSAA VFDVWNATEY ETGFIAKHRN ILLVDKQHQN
101: GHKFAISAAV WYPVDTGLFV TASFDQFVKV WDTNSTQVVM EFKMPGKVYT AAMSPIATTH VLIATGSADV QVRLCDIASG AFTHTLSGHR DGIMSLEWSA
201: SSEWILMSGG CDGAIRFWDI RRAGCFRVLD QSRSQLGKRP LVKSALYKDH TDSLGPSPSA RRRTGISKKS SSALRKIQNP THGHMQQRLH PGLSSSQNRA
301: TAHYGAVTGL RTTADGMYLL SSGSDSRLRL WDIDSGCNTL VNFEAMRLQT GKPLQLAVTE DPSLVFVPCM ASIKAYNLWS GKTFQTFRGH YELVSCCYYS
401: EQDQELYTGS NDRQILVWSP STPAFTKMED DDKILSAADE DNWSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.