Factsheet for VIT_18s0001g09100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030158	Potato	cytosol	73.58	74.39
KRH61410	Soybean	mitochondrion	72.27	73.56
Solyc12g088340.1.1	Tomato	cytosol	72.71	73.51
KRH52095	Soybean	nucleus	70.96	72.71
AT1G27840.3	Thale cress	nucleus	67.03	68.07
CDX84902	Canola	plastid	65.72	66.89
Bra032850.1-P	Field mustard	plastid	65.72	66.89
CDY27634	Canola	plastid	65.5	66.67
AT1G19750.1	Thale cress	mitochondrion	65.28	66.44
GSMUA_Achr6P19320_001	Banana	nucleus	65.5	65.79
Os02t0307200-01	Rice	mitochondrion	26.64	63.87
Zm00001d042794_P003	Maize	nucleus	60.48	62.25
TraesCS3B01G403200.2	Wheat	nucleus	61.35	62.03
TraesCS3A01G371000.2	Wheat	nucleus	61.14	61.81
KXG33728	Sorghum	nucleus	60.7	61.78
TraesCS3D01G364100.2	Wheat	nucleus	60.92	61.59
HORVU3Hr1G084470.1	Barley	plastid	23.58	55.1

Protein Annotations

EntrezGene:100247086	MapMan:14.6.2.1	Gene3D:2.130.10.10	ProteinID:CBI19401	ProteinID:CBI19401.3	UniProt:E0CP23
EMBL:FN595227	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001BE1228
ArrayExpress:VIT_18s0001g09100	EnsemblPlantsGene:VIT_18s0001g09100	EnsemblPlants:VIT_18s0001g09100.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_010664514.1	:	:	:

Description

No Description!

Coordinates

chr18:+:7574634..7580062

Molecular Weight (calculated)

50759.8 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.340

Length

458 amino acids

Sequence
(BLAST)

001: MWKDLGDREA GKLRPYSFSN RITSDRIASL QLSNYKEIVS PHRGAVNSLQ VDLTEGRYLL SGASDASAAV YDIQRATEYE GGSLVAKHKS IFVVDKQHEH
101: GHKYAISSAI WYPIDTGLFI TGSYDHYINV WDTNTTQVVV NFKMPGKIYR TAMSSLATAH MLIAAGTEDV QVRLCDIASG AFAHTLSGHR DGVMTVEWST
201: SSEWVLVTGG CDGAIRFWDI RRAGCFLVLD QSQSQLGRRP PLLECSTANK APMSKSFPAS QSVNVRSRAP QRKFAYGNGS KQSATGRTSS QAKGLVRQRL
301: HPGMLSSQDR ATSHYGAVTG LKVTDDGMYL LSAGSDSRLR LWDIMSGCNT LVNFETVRLQ TSKAMQLAIT NDSALVFVPC MTAVKAFDVW SGKTAMTFRG
401: HYEYVNCCWL SLQDQELYTG GNDRQILVWS PSRLNFDEMD HGSREEPIHA QDQDNWSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.