Factsheet for PGSC0003DMT400030158

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088340.1.1	Tomato	cytosol	97.13	97.13
VIT_18s0001g09100.t01	Wine grape	nucleus	74.39	73.58
KRH61410	Soybean	mitochondrion	70.64	71.11
KRH52095	Soybean	nucleus	68.87	69.8
AT1G27840.3	Thale cress	nucleus	68.21	68.51
AT1G19750.1	Thale cress	mitochondrion	66.23	66.67
Bra032850.1-P	Field mustard	plastid	65.12	65.56
CDY27634	Canola	plastid	64.9	65.33
CDX84902	Canola	plastid	64.46	64.89
Os02t0307200-01	Rice	mitochondrion	26.49	62.83
GSMUA_Achr6P19320_001	Banana	nucleus	62.47	62.06
Zm00001d042794_P003	Maize	nucleus	60.71	61.8
KXG33728	Sorghum	nucleus	61.15	61.56
TraesCS3B01G403200.2	Wheat	nucleus	60.49	60.49
TraesCS3A01G371000.2	Wheat	nucleus	60.26	60.26
TraesCS3D01G364100.2	Wheat	nucleus	60.04	60.04
HORVU3Hr1G084470.1	Barley	plastid	23.18	53.57

Protein Annotations

EntrezGene:102590960	MapMan:14.6.2.1	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1ATT5	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400011544	PGSC:PGSC0003DMG400011544	EnsemblPlants:PGSC0003DMT400030158	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296E4C2
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006342666.1
SEG:seg	:	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011544]

Coordinates

chr12:+:56221757..56228576

Molecular Weight (calculated)

50001.0 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.421

Length

453 amino acids

Sequence
(BLAST)

001: MWKEIGDREF GKLRPNLFSN RIKSARIASI QLSNYKDIIS PHRGSVNSLQ VDLTEGRYLL SSASDASVAV YDVQRATDYD ESGLIAKHKH ILLVDKQHEQ
101: GHKYAISTAN WYPIDTGLFI TGSYDHYVNV WDTNTTQVVV NFKMPGKVYK TAMSPVATSH MLIAAGTEDV QVRLCDISSG AFAHTLSGHR DGVMSVEWSA
201: SSEWVLVTGG CDGAIRFWDI RRAGCFRVLD QSHTQLGRRP SLLTRSTANK GSTLKPSSGG PNSSAKGRPS QKKMGNGVSI KHSAIARQVR GSGKQRLHPG
301: MLSSQDRATA HYGAVNGLKM TNDGMYLLSA GSDSRLRLWD IESGCNTLVN FETSRLQATK ATQLAISHDS TLVFVPCMST TKAFDLWSGK TMMDLRGHYE
401: NVNCCLYNSL DQELFTGGND RKILVWSPSR TTTEELEGRE GQSFAIDQDN WSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.