Factsheet for Bra032850.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27634	Canola	plastid	98.67	98.67
AT1G27840.3	Thale cress	nucleus	87.56	87.36
AT1G19750.1	Thale cress	mitochondrion	85.33	85.33
VIT_18s0001g09100.t01	Wine grape	nucleus	66.89	65.72
PGSC0003DMT400030158	Potato	cytosol	65.56	65.12
KRH61410	Soybean	mitochondrion	65.11	65.11
KRH52095	Soybean	nucleus	64.0	64.43
Solyc12g088340.1.1	Tomato	cytosol	64.67	64.24
Os02t0307200-01	Rice	mitochondrion	27.11	63.87
GSMUA_Achr6P19320_001	Banana	nucleus	60.89	60.09
KXG33728	Sorghum	nucleus	58.44	58.44
Zm00001d042794_P003	Maize	nucleus	57.11	57.75
TraesCS3B01G403200.2	Wheat	nucleus	58.0	57.62
TraesCS3A01G371000.2	Wheat	nucleus	57.56	57.17
TraesCS3D01G364100.2	Wheat	nucleus	57.56	57.17
HORVU3Hr1G084470.1	Barley	plastid	20.89	47.96

Protein Annotations

MapMan:14.6.2.1	EnsemblPlantsGene:Bra032850	EnsemblPlants:Bra032850.1	EnsemblPlants:Bra032850.1-P	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR017986	UniProt:M4EVL7	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF130
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002542580	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

AT1G27840 (E=6e-233) ATCSA-1 | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:+:12415711..12418069

Molecular Weight (calculated)

49213.8 Da

IEP (calculated)

8.400

GRAVY (calculated)

-0.370

Length

450 amino acids

Sequence
(BLAST)

001: MWQAIQSRET GRTPSNSFAN QLKSRRISSL QLSNRKDFVS PHRASVNSLQ VDLTEGRYLL SGASDGSAAV FDTQRATDSE ASGLIAKHKC VFSVDKGHEH
101: GHRFAVSSAV WYPIDTGLFV TGSFDHLIKV WDTNTAQAVV DFKMPGKVYR TAMSSLAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSVTQLGVRP PILKHTAVNS KVSAEKSSSG GKNRLKTLQS KHTGSQSMKG SSSVKASVEK SRQKRLHPGM
301: LSTLDRATAH YGVVTGFKAT NDGMYLLSAG SDSRIRLWDT QSGCNTLLNF ETGRLQTSKA IQLATSDDPA LVFVPCMKTV KAFGMWSGRT TLMFRGHYES
401: VNTCCFNSTD QELYTSGADR QILVWSPGGS VEGEMDQDEE VAEDKDNWSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.