CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27634	Canola	plastid	95.33	95.33
AT1G27840.3	Thale cress	nucleus	85.56	85.37
AT1G19750.1	Thale cress	mitochondrion	84.22	84.22
VIT_18s0001g09100.t01	Wine grape	nucleus	66.89	65.72
KRH61410	Soybean	mitochondrion	65.56	65.56
KRH52095	Soybean	nucleus	64.44	64.88
PGSC0003DMT400030158	Potato	cytosol	64.89	64.46
Solyc12g088340.1.1	Tomato	cytosol	64.67	64.24
Os02t0307200-01	Rice	mitochondrion	27.11	63.87
GSMUA_Achr6P19320_001	Banana	nucleus	60.89	60.09
KXG33728	Sorghum	nucleus	57.78	57.78
Zm00001d042794_P003	Maize	nucleus	56.89	57.53
TraesCS3B01G403200.2	Wheat	nucleus	57.33	56.95
TraesCS3A01G371000.2	Wheat	nucleus	56.89	56.51
TraesCS3D01G364100.2	Wheat	nucleus	56.89	56.51
HORVU3Hr1G084470.1	Barley	plastid	20.67	47.45

Protein Annotations

MapMan:14.6.2.1	EnsemblPlants:CDX84902	ProteinID:CDX84902	ProteinID:CDX84902.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00142228001	InterPro:IPR001680	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF130	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EB252D	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaC05g21530D

Coordinates

chrLK031839:+:48088..50694

Molecular Weight (calculated)

49247.0 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.371

Length

450 amino acids

Sequence
(BLAST)

001: MWQAIQARET GRTPCNSFAN QLKSRRISSL QLCNRKDFVS PHRGAVNSLQ VDLTEGRYLL SGASDGSAAV FDTQRATDSE ASGLIEKHKC VFSVDKGHEH
101: GHRFAVSSAV WYPIDTGLFV TGSFDHLIKV WDTNTAQAVV DFKMPGKVYR TAMSSLAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSVTQLGVRP PILKHSAVST KVSAEKSSSG AKNRLKTLHS KHTGSQNMKG SSSARPSVEK ARQKRLHPGM
301: LSTLDRATAH YGVVTGLKAT NDGMYLLSAG SDSRIRLWDT QSGCNTLLNF ETGRLQTSKA IQMATSDDPA LVFVPCMKTV KAFGMWSGRT TLMFRGHYES
401: VNTCCFNSTD QELYTSGADR QILVWSPGGS VEGEMDQDEE AAEDKDNWSD

Best Arabidopsis Sequence Match ( AT1G27840.1 )
(BLAST)

001: MWEAIKDRET GRIRSNSFAN RFKSRRILSL QLSNRKDFVS PHRGSVNSLQ VDLTEGRYLL SGAADGSAAV FDVQRATDYE ASGLIAKHKC IFTVDKQHEN
101: GHKYAISSAI WYPIDTGLFI TGSFDHYLKV WDTNTAQAVV DFKMPGKVYR TAMSSMAMSH TLIAAGTEDV QVRLCDIASG AFSHTLSGHR DGVMSVEWST
201: SSEWVLYTGG CDGAIRFWDI RRAGCFRVLD QSQTQLGFRP PILKRTAVGS KLSSVAKSSL GGQNRLKTLQ SKQTGSQSVK GSSSAKASVE KSRQKRIHPG
301: MLSTLDRATA HYGAVTGLKA TNDGMYLLSA GSDSRIRLWD IESGRNTLVN FETGRIQTNK GIQLDTSDDP ALVFVPCMKT VKAFGMWSGR TTLMLRGHYE
401: SVNTCCFNSN DQELYTSGSD RQILVWSPGG TVEDEMVQDE VAEDKDNWSD

Arabidopsis Description

ATCSA-1Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUT3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.