Factsheet for Solyc01g067140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
peroxisome 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	20.79	62.69
Solyc01g067210.2.1	Tomato	cytosol	65.84	46.75
Solyc01g067100.2.1	Tomato	cytosol	77.23	42.05
Solyc05g018040.1.1	Tomato	cytosol	25.5	41.04
VIT_05s0020g01320.t01	Wine grape	cytosol	73.76	40.05
KRH37131	Soybean	cytosol, nucleus	73.76	40.05
KRH12127	Soybean	cytosol	73.51	39.92
KRH02236	Soybean	cytosol, nucleus	73.27	39.78
KRH50876	Soybean	endoplasmic reticulum	73.27	39.78
Solyc06g084520.2.1	Tomato	cytosol	67.08	36.62
Solyc09g074680.2.1	Tomato	cytosol	64.85	35.41
Solyc09g010050.1.1	Tomato	cytosol	60.64	33.33
Solyc06g008710.1.1	Tomato	cytosol	58.42	31.76
KRH15695	Soybean	cytosol	24.75	27.4
Solyc02g087900.2.1	Tomato	cytosol	34.65	19.1
Solyc01g010820.2.1	Tomato	cytosol	33.66	18.53
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	32.43	16.69
Solyc02g070460.2.1	Tomato	plastid	32.92	16.58
Solyc01g067270.2.1	Tomato	cytosol	8.91	15.72
Solyc01g099290.2.1	Tomato	cytosol	2.72	4.14
Solyc06g008080.1.1	Tomato	cytosol	1.73	2.29
Solyc01g067200.1.1	Tomato	cytosol	0.5	1.04
Solyc01g067260.2.1	Tomato	plastid	0.25	0.48
Solyc01g067120.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388
UniProt:K4AWW3	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc01g067140.1	EnsemblPlants:Solyc01g067140.1.1
UniParc:UPI0002762D58	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:75542772..75544952

Molecular Weight (calculated)

47173.3 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.312

Length

404 amino acids

Sequence
(BLAST)

001: MSCILSNKLV FCNLQQADKR GMVGLQEQVF VRKVIELHDK YLAYVNNCFQ NHTFSQGKSE NLSDEAMEES LEKVELPLLC ISTTTRIFFF VTSLRLPFFR
101: RRLDRLLLFD NSVNDEHERS VLTKLKQQCG GQFISKMERM VTDLTWAKEN QGSFEEYLSN SPITNPGIDL TVIVLTTGFW PSYKSFDLHL PVEMVRCIET
201: FKEFYQTQTN DRKLKWTYSL GTCNINGNFE PKTIELIVTT YQASALLLFN ASDRLSYQEI MTQLNLSDDD VVRLLHSLSC AKYKILNKEP STKTISPTNV
301: FEFNSKFTDK MRRIKIPLPP VDEKKRVIED VEMDRRNDVY ASIMRIMKSH KVLAQQQLVM ECIQMLGQIF KPDVKVIKKR IEDLISRQYL ARDKYNPNLF
401: KYLA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.