Factsheet for Solyc02g087900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003338	Potato	cytosol	99.05	99.05
Solyc01g010820.2.1	Tomato	cytosol	86.36	86.24
GSMUA_Achr7P18000_001	Banana	cytosol	81.17	84.04
KRG93520	Soybean	cytosol	83.9	83.9
KRH18483	Soybean	cytosol	83.36	83.36
GSMUA_Achr8P16990_001	Banana	cytosol	80.49	83.33
GSMUA_AchrUn_...	Banana	cytosol	80.35	83.19
VIT_14s0108g00490.t01	Wine grape	cytosol	88.13	82.4
EES05529	Sorghum	cytosol	82.13	81.79
Zm00001d018043_P001	Maize	cytosol	81.72	81.39
TraesCS6D01G285800.1	Wheat	cytosol	81.72	81.39
Os02t0746000-01	Rice	cytosol	81.72	81.39
TraesCS6B01G335200.1	Wheat	cytosol	81.58	81.25
TraesCS6A01G306600.1	Wheat	cytosol	81.58	81.25
GSMUA_AchrUn_...	Banana	cytosol	65.48	80.67
HORVU6Hr1G075720.2	Barley	cytosol	81.17	79.76
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	6.96	38.06
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	40.25	37.58
Solyc02g070460.2.1	Tomato	plastid	40.65	37.16
Solyc01g067210.2.1	Tomato	cytosol	27.01	34.8
Solyc01g067140.1.1	Tomato	cytosol	19.1	34.65
Solyc09g074680.2.1	Tomato	cytosol	34.65	34.32
Solyc01g067100.2.1	Tomato	cytosol	34.38	33.96
Solyc06g084520.2.1	Tomato	cytosol	33.97	33.65
Solyc09g010050.1.1	Tomato	cytosol	32.06	31.97
Solyc06g008710.1.1	Tomato	cytosol	28.79	28.4
Solyc05g018040.1.1	Tomato	cytosol	9.14	26.69
Solyc01g067270.2.1	Tomato	cytosol	7.64	24.45
Solyc01g067200.1.1	Tomato	cytosol	4.77	18.23
Solyc01g099290.2.1	Tomato	cytosol	6.41	17.67
Solyc06g008080.1.1	Tomato	cytosol	7.37	17.65
Solyc01g067120.2.1	Tomato	cytosol	3.96	17.26
Solyc01g067260.2.1	Tomato	plastid	4.37	15.31

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	UniProt:K4BBU6	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
EnsemblPlantsGene:Solyc02g087900.2	EnsemblPlants:Solyc02g087900.2.1	UniParc:UPI00027682EB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

No Description!

Coordinates

chr2:+:50162392..50166597

Molecular Weight (calculated)

85293.0 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.509

Length

733 amino acids

Sequence
(BLAST)

001: MSAPKKKNFQ IEAFKHRVVV DPKYAEKTWK ILEHAIHEIY NHNASGLSFE ELYRNAYNMV LHKFGEKLYS GLVSTMTAHL KEIAKHIEST QGGLFLEELN
101: RIWAEHNKAL QMIRDILMYM DRTFIPSTHK TPVHELGLNL WRDNIIHSSK IHKRLQDTLL ELVQRERTGE VINRGLMRNV IQMLMDLGSS VYQEDFEKPF
201: LDVSADFYRL ESQQYIECCD CGDYLKKAEK RLMEEIERVS HYLDTKSEPK LTNVVEKQMI ESHMHRLVHM ENSGLVNMIV NDKYEDLGRM YNLLRRVSTG
301: LALIRDVMTS HIREIGKQLV TDPEKLKDPV DFVQRLLDEK DKHDKIISLA FNNDKTFQNA LNSSFEFFIN LNPRSPEFIS LFVDDKLRKG LKGVTEEDVE
401: IILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SQDTMQGFHA AVGADLAEGP SLTVQVLTTG
501: SWPTQSVNTC NLPSEILGVC DRFKTYYLGT HTGRRLSWQT NMGTADLKAT FGKGQKHELN VSTYQMCILM LFNKSDRMSY KEIEQATEIP ASDLKRCLQS
601: LACVKGKNVL RKEPMSKDIA EDDAFYFNDK FSSKFYKVKI GTVVAQKESE PEKQETRQRV EEDRKPQIEA AIVRIMKSRR VLDHNNIVAE VTKQLQSRFL
701: PNPVVIKKRI ESLIEREFLE RDKTDRKLYR YLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.