CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90755
EER97813
EER99824
EES00131
EES01459
EES01931
EES02774
EES05370
EES09114
EES11006
EES19490
KXG25976
KXG33331
KXG34465
OQU88021
OQU88783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	EES09114	AT1G01640.1	15772280
AT1G26830.1	OQU88021	AT1G05690.1	15772280
AT1G26830.1	EES00131	AT1G64280.1	19490895
AT1G26830.1	EES02774	AT2G26990.1	12615944
AT1G26830.1	EER97813	AT2G39760.1	15618422
AT1G26830.1	EER97813	AT2G39760.1	15659098
AT1G26830.1	EER97813	AT2G39760.1	15772280
AT1G26830.1	EER99824	AT3G06190.1	15772280
AT1G26830.1	EER90755	AT3G43700.1	15772280
AT1G26830.1	KXG25976	AT3G43700.1	15772280
AT1G26830.1	KXG34465	AT3G43700.1	15772280
AT1G26830.1	EES01931	AT3G48360.1	15772280
AT1G26830.1	EES05370	AT3G48360.1	15772280
AT1G26830.1	EES11006	AT3G48360.1	15772280
AT1G26830.1	EES01459	AT4G07670.1	15749712
AT1G26830.1	KXG33331	AT4G07670.1	15749712
AT1G26830.1	OQU88783	AT4G08455.1	15749712
AT1G26830.1	EES19490	AT5G13060.1	15659098
AT1G26830.1	EES09114	AT5G48510.1	15772280
AT1G26830.1	EES01931	AT5G63160.1	15772280
AT1G26830.1	EES05370	AT5G63160.1	15772280
AT1G26830.1	EES11006	AT5G63160.1	15772280
AT1G69670.1	EER97813	AT2G39760.1	15618422
AT1G69670.1	EER97813	AT2G39760.1	15659098
AT1G69670.1	EES01459	AT4G07670.1	15749712
AT1G69670.1	KXG33331	AT4G07670.1	15749712
AT1G69670.1	OQU88783	AT4G08455.1	15749712
AT1G69670.1	EES19490	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018043_P001	Maize	cytosol	98.1	98.1
TraesCS6B01G335200.1	Wheat	cytosol	94.7	94.7
Os02t0746000-01	Rice	cytosol	94.7	94.7
TraesCS6D01G285800.1	Wheat	cytosol	94.57	94.57
TraesCS6A01G306600.1	Wheat	cytosol	94.43	94.43
HORVU6Hr1G075720.2	Barley	cytosol	93.61	92.36
GSMUA_Achr7P18000_001	Banana	cytosol	82.2	85.45
GSMUA_AchrUn_...	Banana	cytosol	81.79	85.03
GSMUA_Achr8P16990_001	Banana	cytosol	81.79	85.03
VIT_01s0026g02230.t01	Wine grape	cytosol	82.74	83.08
PGSC0003DMT400003338	Potato	cytosol	82.2	82.54
Solyc02g087900.2.1	Tomato	cytosol	81.79	82.13
Solyc01g010820.2.1	Tomato	cytosol	81.25	81.47
KRG93520	Soybean	cytosol	80.98	81.31
KRH18483	Soybean	cytosol	80.84	81.17
PGSC0003DMT400016765	Potato	cytosol	80.84	81.06
KRG99095	Soybean	cytosol	79.62	80.05
KRH45896	Soybean	cytosol	79.62	80.05
AT1G26830.1	Thale cress	cytosol	79.21	79.64
AT1G69670.1	Thale cress	cytosol	78.94	79.37
CDY16196	Canola	cytosol	78.67	79.1
CDY45004	Canola	cytosol	78.67	79.1
CDY50732	Canola	cytosol	78.67	79.1
CDY46437	Canola	cytosol	78.53	78.96
Bra016291.1-P	Field mustard	cytosol	78.4	78.83
Bra024680.1-P	Field mustard	cytosol	78.4	78.83
VIT_14s0108g00490.t01	Wine grape	cytosol	83.7	78.57
EES14624	Sorghum	cytosol	74.86	74.66
KRH70713	Soybean	cytosol	70.38	71.25
EER93338	Sorghum	plastid	40.62	35.85
EES19028	Sorghum	cytosol	34.78	34.41
EES00748	Sorghum	cytosol	34.65	34.27
KXG32508	Sorghum	cytosol	29.89	29.53
EES04173	Sorghum	cytosol	8.7	22.38
KXG35165	Sorghum	cytosol	6.39	19.42

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	EntrezGene:8066432	UniProt:C5XYS7
ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlants:EES05529	ProteinID:EES05529	ProteinID:EES05529.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF74
SMART:SM00182	SMART:SM00884	EnsemblPlantsGene:SORBI_3004G237400	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
unigene:Sbi.9531	UniParc:UPI0001A854B0	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002452553.1	:

Description

hypothetical protein

Coordinates

chr4:+:58562234..58565319

Molecular Weight (calculated)

85532.0 Da

IEP (calculated)

7.476

GRAVY (calculated)

-0.554

Length

736 amino acids

Sequence
(BLAST)

001: MSGGGPPRKR NFKIEAFKNR VELDPKYAER TWKVLEHAIH EIYNHNASGL SFEELYRSAY NMVLHKYGEK LYDGLQNTMT WRLKEISKSI EAAQGGLFLE
101: ELNAKWMDHN KALQMIRDIL MYMDRTYVPT SHRTPVHELG LNLWRDHIIH SPMIHSRLVN TLLDLIKGER MGEVINRGLM RSITKMLMDL GPAVYQDDFE
201: KPFLDVSASF YSVESQEFIE CCDCGNYLKK AERRLNEEME RVSHYLDAGS EAKITSVVEK EMIANHMHRL VHMENSGLVN MLVDDRYEDL GRMYSLFRRV
301: PDGLSTIRDV MTYYLRETGK QLVTDPESLK DPVEFVQRLL NEKDKHDKII SVAFGNDKTF QNALNSSFEY FINLNNRSPE FISLYVDDKL RKGLKGATEE
401: DVEVILDKVM MLFRYLQEKD VFEKYYKQHL AKRLLSGKTV SDDAERSMIV KLKTECGYQF TSKLEGMFTD MKTSQDTMQD FYAKKSEELG DGPTLDVHIL
501: TTGSWPTQPS PPCNLPTEIL TVCEKFRAYY LGTHNGRRLT WQTNMGTADI KATFGKGQKH ELNVSTYQMC VLMLFNNADG LTYKDIERDT EIPASDLKRC
601: LQSLACVKGK NVLRKEPMSK DISEDDTFYF NDKFTSKLVK VKIGTVVAQK ESEPEKQETR QRVEEDRKPQ IEAAIVRIMK SRRVLDHNSI VAEVTKQLQA
701: RFLPNPVVIK KRIESLIERE FLERDKVDRK LYRYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.