CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04173	Sorghum	cytosol	23.97	20.28
EES00748	Sorghum	cytosol	45.04	14.65
EES19028	Sorghum	cytosol	44.21	14.38
KXG32508	Sorghum	cytosol	42.15	13.69
EES05529	Sorghum	cytosol	19.42	6.39
EES14624	Sorghum	cytosol	18.59	6.1
EER93338	Sorghum	plastid	18.18	5.28
PGSC0003DMT400074970	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1310.10	MapMan:35.1	UniProt:A0A1B6QB66	InterPro:Cullin_N	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	EnsemblPlants:KXG35165	ProteinID:KXG35165	ProteinID:KXG35165.1
PFAM:PF00888	PANTHER:PTHR11932	PANTHER:PTHR11932:SF83	EnsemblPlantsGene:SORBI_3002G141600	SUPFAM:SSF74788	UniParc:UPI00081ADA20
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:23047404..23049166

Molecular Weight (calculated)

28260.4 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.434

Length

242 amino acids

Sequence
(BLAST)

001: MEQGDKKIVG LEEGWSFVAT GLSKIRRAID CGGEGLSSGE YMQVFTTVYC MCTQASPHNY SEQLYQRYKE DLDDYIKSNV LTFLRELRGE TLLRELVERW
101: RNHNLIVRSE TNIFRYLNRY YISKRSLPSI QQVSSSSFHD LVFNELKSSV TRTVLGMIDD EREHKLIDRD LLKNVLAIYV EIGSGSLRIY RVDFEQAFLE
201: STKNYYSRKF QSWNLDYSDD HDYKIKVASG FFTFFDAVGI DG

Best Arabidopsis Sequence Match ( AT1G43140.1 )
(BLAST)

001: MATILFKVIM MKELILLEEG WSVMKTGVAK LQRILEDLSE PPFDPGQYIN LYTIIYDMCL QQPPNDYSQE LYNKYRGVVD HYNKETVLPS MRERHGEYML
101: RELVKRWANH KILVRWLSRF CFYLDRFYVA RRGLPTLNDV GFTSFHDLVY QEIQSEAKDV LLALIHKERE GEQIDRTLVK NVIDVYCGNG VGQMVIYEED
201: FESFLLQDTA SYYSRKASRW SQEDSCPDYM LKAEECLKLE KERVTNYLHS TTEPKLVEKV QNELLVVVAK QLIENEHSGC LALLRDDKMG DLSRMYRLYR
301: LIPQGLEPIA DLFKQHVTAE GNALIKQAAD AATNQDASAS QVLVRKEIEL HDKYMVYVDE CFQKHSLFHK LLKEAFEVFC NKTVAGASSA EILATYCDNI
401: LKTRGGSEKL SDEATEITLE KVVNLLVYIS DKDLFAEFYR KKQARRLLFD RSGIMKEVTD ITLARELQTN FVDYLSANMT TKLGIDFTVT VLTTGFWPSY
501: KTTDLNLPTE MVNCVEAFKV FYGTKTNSRR LSWIYSLGTC HILGKFEKKT MELVVSTYQA AVLLLFNNAE RLSYTEISEQ LNLSHEDLVR LLHSLSCLKY
601: KILIKEPMSR TISKTDTFEF NSKFTDKMRK IRVPLPPMDE RKKVVEDVDK DRRYAIDAAL VRIMKSRKVL AHQQLVSECV EHLSKMFKPD IKMIKKRIED
701: LINRDYLERD TENANTFKYV A

Arabidopsis Description

Putative cullin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P0CH31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.