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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 4
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92695
EER97436
EES00342
EES06334
EES13157
EES13281
KXG22678
KXG25821
KXG27287
KXG31183
KXG33728
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46210.1 KXG33728 AT1G19750.1 20622147
AT5G46210.1 KXG27287 AT1G71230.1 16844902
AT5G46210.1 EES06334 AT2G02560.1 16844902
AT5G46210.1 KXG31183 AT2G32950.1 16844902
AT5G46210.1 EER97436 AT3G13550.1 16844902
AT5G46210.1 KXG22678 AT4G05420.1 16792691
AT5G46210.1 KXG22678 AT4G05420.1 16844902
AT5G46210.1 KXG22678 AT4G05420.1 18223036
AT5G46210.1 KXG22678 AT4G05420.1 18551167
AT5G46210.1 OQU81583 AT4G14110.1 16844902
AT5G46210.1 KXG25821 AT4G15900.1 18223036
AT5G46210.1 KXG22678 AT4G21100.1 16792691
AT5G46210.1 EES13157 AT4G31160.1 18552200
AT5G46210.1 EES13281 AT5G14250.1 16844902
AT5G46210.1 EER92695 AT5G42970.1 16844902
AT5G46210.1 EES00342 AT5G58760.1 18551167
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034361_P001 Maize cytosol, plastid 97.6 97.84
Zm00001d013116_P002 Maize plastid 97.12 94.19
TraesCS5A01G425300.1 Wheat cytosol 79.86 93.67
KRH21073 Soybean cytosol 32.01 93.36
TraesCS5B01G427400.1 Wheat cytosol 87.53 90.91
HORVU5Hr1G103580.2 Barley plastid 90.17 90.28
TraesCS5D01G433700.3 Wheat cytosol, plastid 89.69 90.12
KRH11182 Soybean cytosol, plastid 77.34 81.85
GSMUA_Achr4P22850_001 Banana cytosol 78.78 81.82
KRH58640 Soybean cytosol 75.06 80.77
KRH42547 Soybean cytosol 73.74 79.97
VIT_10s0003g03710.t01 Wine grape cytosol 76.86 79.93
Solyc02g021470.2.1 Tomato cytosol, nucleus, plastid 74.58 79.24
CDX77644 Canola cytosol 72.42 78.75
CDY33461 Canola cytosol 71.82 78.71
Bra025031.1-P Field mustard cytosol 71.58 78.55
CDY43957 Canola cytosol 72.66 78.09
Bra022023.1-P Field mustard plastid 73.38 77.96
CDX87735 Canola cytosol 72.66 77.69
CDY35152 Canola plastid 72.3 76.72
Bra017569.1-P Field mustard plastid 72.18 76.59
CDY03235 Canola plastid 72.54 76.58
AT5G46210.1 Thale cress cytosol 72.66 76.52
Solyc02g070460.2.1 Tomato plastid 73.14 76.06
GSMUA_Achr7P01270_001 Banana cytosol 78.78 75.09
KRH21072 Soybean plastid 41.97 72.46
EES05529 Sorghum cytosol 35.85 40.62
EES14624 Sorghum cytosol 35.13 39.7
EES00748 Sorghum cytosol 28.18 31.59
EES19028 Sorghum cytosol 27.58 30.91
KXG32508 Sorghum cytosol 25.54 28.59
KXG35165 Sorghum cytosol 5.28 18.18
EES04173 Sorghum cytosol 6.12 17.83
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.10.2620Gene3D:1.20.1310.10MapMan:19.2.2.8.3.1MapMan:26.1.1.3.1EntrezGene:8084141
UniProt:C5WY66InterPro:Cullin_CSInterPro:Cullin_NInterPro:Cullin_homologyInterPro:Cullin_homology_sfInterPro:Cullin_neddylation_domain
InterPro:Cullin_repeat-like_dom_sfEnsemblPlants:EER93338ProteinID:EER93338ProteinID:EER93338.1GO:GO:0000003GO:GO:0000151
GO:GO:0000209GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006139
GO:GO:0006259GO:GO:0006281GO:GO:0006464GO:GO:0006511GO:GO:0006950GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009628
GO:GO:0009640GO:GO:0009719GO:GO:0009755GO:GO:0009790GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0010100GO:GO:0010154GO:GO:0010182GO:GO:0016740GO:GO:0019538
GO:GO:0031461GO:GO:0031625GO:GO:0042787GO:GO:0048366GO:GO:0048367GO:GO:0048575
GO:GO:0048825GO:GO:0061630GO:GO:0080008InterPro:IPR016158InterPro:IPR036388PFAM:PF00888
PFAM:PF10557ScanProsite:PS01256PFscan:PS50069PANTHER:PTHR11932PANTHER:PTHR11932:SF27SMART:SM00182
SMART:SM00884EnsemblPlantsGene:SORBI_3001G065100SUPFAM:SSF46785SUPFAM:SSF74788SUPFAM:SSF75632unigene:Sbi.4665
UniParc:UPI0001A82BD0InterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sfRefSeq:XP_002466340.1SEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:4926191..4934235
Molecular Weight (calculated)
94372.1 Da
IEP (calculated)
8.089
GRAVY (calculated)
-0.314
Length
834 amino acids
Sequence
(BLAST)
001: MSQPHAAAAA SKRPFSSTTT SPSPTSSPAT PLMKKAKHPA ASSSSAGTVE KNGIQLDTAV AAAAATGGGR TNGEEDAEMV LADQDELPAP SAPASAGVAA
101: NLFRKKATLP QPSTSARKPL RIKIGQPKLP KNFEEDTWAI LKDAITAIFL KQKLSCDVEK LYQAAGDLCL HKLGANLYER IKKECEIHIA EKISALVGQS
201: PDLVVFLSLV QRTWQDFCDQ MLIIRGIALL LDVKYVKNVA NICSVWDMGL QLFRKHLSLS PEIEHKTVTG LLRLIESERL GEAIDRTLLS HLLKMLTALG
301: MYSESFEKPF LECTSEFYAT EGVKYMQQSD IPDYLKHVES RLQEEHERCI LYLEANTRKP LIATTEKQLL ERHTSAIIEK GFSMLMDANR INDLSRMYDL
401: FQRVNAVELL KLALSSYIRA TGQGIIMDEE KDRELVPFLL DFKASLDKIL EESFAKNEAF SNTIKDSFEH LINLRQNRPA ELIAKFLDEK LRAGNKGTSE
501: EELEGILDRV LVLFRFIQGK DVFEAFYKKD LAKRLLLGKS ASIDAEKSMI TKLKTECGSQ FTNKLEGMFK DIELSKEIND SFRQSSQART KLPSGIEMSV
601: HVLTTGYWPT YPPMDVKLPH ELNVYQDIFK EFYLSKYSGR RLMWQNSLGH CVLKADFPKG KKELAVSLFQ SVVLMLFNDA QKLSFLDIKD STGIEDKELR
701: RTLQSLACGK VRVLQKIPKG RDVEDKDEFV FNEDFSAPLY RIKVNAIQMK ETVEENTSTT ERVFQDRQYQ VDAAIVRIMK TRKVLSHTLL ITELYQQLKF
801: PVKPADIKKR IESLIDREYL ERDRSNPQIY NYLA
Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)
001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA
Arabidopsis Description
CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.