CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049487_P001	Maize	cytosol	95.12	94.99
Zm00001d024466_P001	Maize	cytosol	91.33	91.33
Os08t0170900-01	Rice	cytosol	84.15	84.95
EES05529	Sorghum	cytosol	74.66	74.86
EER93338	Sorghum	plastid	39.7	35.13
EES00748	Sorghum	cytosol	34.96	34.68
EES19028	Sorghum	cytosol	34.96	34.68
KXG32508	Sorghum	cytosol	30.22	29.93
EES04173	Sorghum	cytosol	7.59	19.58
KXG35165	Sorghum	cytosol	6.1	18.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	EntrezGene:8080881	UniProt:C5YHJ0
ncoils:Coil	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlants:EES14624	ProteinID:EES14624	ProteinID:EES14624.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF79
SMART:SM00182	SMART:SM00884	EnsemblPlantsGene:SORBI_3007G056500	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
unigene:Sbi.5841	UniParc:UPI0001A87CCD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002445129.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:5813831..5819502

Molecular Weight (calculated)

85711.9 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.558

Length

738 amino acids

Sequence
(BLAST)

001: MNGGGGGQKK RGTRIEPFRH RVETDPKFFD KSWRKLHDAI REIYNHNASG LSFEELYRTA YNMVLNKFAP QLYEKLTENM KEHLEDMRTC IDAAQGGLFL
101: EELQRKWNDH NKALTMIRDI LMYMDRTYIP TNKKTPVFDH GLELWRDTIV RSPTIQRRLS DTLLELIHSE RTGDVINRGL MRTTTKMLMD LGLSVYQDDF
201: ERPFLEVSAS FYSGESQQFI ECCACGEYLK QAERRLSEES ERVSQYLDVK THEKITAVVV NEMLANHMQR LILMENSGLV NMLVEDRYED LTRMYTLFNH
301: VPDGLTTIRS VMASHIKDTG KSLVTDPERL KDPVDFVQRL LNMKDKYDNI INVSFSNDKS FLNALNSSFE HFINLNNRSP EFISLFVDDK LRKGVKEANE
401: EDLETVLDKV MMLFRYLQEK DLFEKYYKQH LAKRLLSGKN ASDDSERSML VKLKTECGYQ FTSKLEGMFN DLKTSEDTTQ GFYASTSSEL LADAPTISVQ
501: ILTTGSWPTQ TCNTCNLPPE IVPISEKFRA YYLGTHNGRR LTWQTNMGHA DIKATFGNGS KHELNVSTYQ MCVLMLFNSS DVLTYREIEQ STAIPATDLK
601: RCLQSLALVK GKQVLRKEPM SRDIADDDSF FVNDKFTSKL FKVKIGTVAA QKETDPEKLE TRQRVEEDRK PQIEAAIVRI MKSRRVLDHN SIMMEVTKQL
701: QPRFMPNPVV IKKRIESLIE REFLERDKTD RKMYRYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.