CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93338
KXG22678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	KXG22678	AT4G05420.1	16792691
AT5G58760.1	KXG22678	AT4G05420.1	18551167
AT5G58760.1	EER93338	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008597_P001	Maize	mitochondrion, nucleus	86.45	88.42
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	80.62	82.46
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	80.1	81.64
Os01t0141700-01	Rice	nucleus	81.48	81.48
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	80.45	81.42
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	59.52	63.32
KRH72670	Soybean	cytosol	28.13	62.12
VIT_06s0004g06550.t01	Wine grape	nucleus	57.98	60.47
KRH17028	Soybean	nucleus	56.78	59.0
CDY32686	Canola	nucleus	54.03	57.8
Bra020355.1-P	Field mustard	nucleus	54.2	57.77
AT5G58760.1	Thale cress	nucleus	54.89	57.45
KRH72668	Soybean	nucleus	28.64	57.39
CDY02834	Canola	nucleus	53.86	56.78
Solyc09g031610.2.1	Tomato	nucleus	52.83	52.47
PGSC0003DMT400056773	Potato	nucleus	12.35	49.66

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	UniProt:C5XQ48	InterPro:DDB2	EnsemblPlants:EES00342	ProteinID:EES00342
ProteinID:EES00342.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169
PANTHER:PTHR15169:SF0	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G077600	SUPFAM:SSF50978	UniParc:UPI00081AB9C9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:6628209..6632681

Molecular Weight (calculated)

64599.0 Da

IEP (calculated)

7.947

GRAVY (calculated)

-0.662

Length

583 amino acids

Sequence
(BLAST)

001: MGPTTGSRFV YNRRRRGGRH AVEEASDEEE QRVDSSSSSS DEEGDEEEDA EASGEDIDDE EEEEAVAAEP AAKQSPAAAE TGEKRGGRKG PISISLKKVC
101: KVCKRTGHQA GFQGAVYIDC PMKPCFLCKM PGHTTLTCPH RVAMEHGVIP APRRNTNTSL DYVFQSQVKG KISMVKPKFL IPNQLECGNI KFHQRRVTCL
201: EFHPTKNNVL LSGDKKGLLG IWDYVKLHEK ITYDSVHSCI LNSMKIDTTN DGMVYTASSD GTISFTDLDT GIGSPLLNLN PNGWNGPSSW HMIYGMDLNT
301: DKGLLLVADN FGFLYFLDRR SKTRIGHPIL IHKKGSKVTS LHCNPARPEV LLSSGNDHYA RIWDTRKLEA NSPLASLAHG RVVNSGYFSP RSGNKILTTC
401: QDNRIRVWDY ILGDLQSPSR EIVHSHDFNR HLTPFKAEWD PKDYTETVAV IGRYISENYN GVALHPIDFI DTSSGKLLAE VMDPDITTIS PVNKLHPQDD
501: ILATGSSRSI FIWKPKTEDE LTEERAKQKT KEYIYGSSSR KKANGKHGNS SGDDSDGDSG GKNKKAKTTR FTHAVKGKGK SKV

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.