Factsheet for AT5G58760.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02834	Canola	nucleus	85.46	86.08
CDY32686	Canola	nucleus	84.2	86.06
Bra020355.1-P	Field mustard	nucleus	84.2	85.74
KRH72668	Soybean	nucleus	36.09	69.07
KRH17028	Soybean	nucleus	69.12	68.63
VIT_06s0004g06550.t01	Wine grape	nucleus	68.4	68.16
KRH72670	Soybean	cytosol	31.96	67.42
Solyc09g031610.2.1	Tomato	nucleus	64.63	61.33
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	59.6	60.58
PGSC0003DMT400056773	Potato	nucleus	15.44	59.31
Os01t0141700-01	Rice	nucleus	59.25	56.6
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.81	56.49
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.99	56.47
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.99	56.08
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	57.45	54.89
Zm00001d008597_P001	Maize	mitochondrion, nucleus	53.14	51.93

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	EntrezGene:835990	ProteinID:AED97095.1	EMBL:AK175124
ProteinID:ANM70461.1	ArrayExpress:AT5G58760	EnsemblPlantsGene:AT5G58760	RefSeq:AT5G58760	TAIR:AT5G58760	RefSeq:AT5G58760-TAIR-G
EnsemblPlants:AT5G58760.1	TAIR:AT5G58760.1	Unigene:At.29266	ProteinID:BAA97344.1	EMBL:BT010570	InterPro:DDB2
Symbol:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0016567
GO:GO:0019538	GO:GO:0046872	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
RefSeq:NP_001332069.1	RefSeq:NP_200684.2	PFAM:PF00400	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007098	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020100	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169
PANTHER:PTHR15169:SF0	UniProt:Q6NQ88	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00001BE507	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]

Coordinates

chr5:-:23730450..23733707

Molecular Weight (calculated)

62832.5 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.694

Length

557 amino acids

Sequence
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.