Factsheet for Os01t0141700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	81.65	83.51
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	81.99	82.99
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	80.62	82.17
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	81.48	81.48
Zm00001d008597_P001	Maize	mitochondrion, nucleus	76.5	78.25
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	60.21	64.05
KRH72670	Soybean	cytosol	28.64	63.26
VIT_06s0004g06550.t01	Wine grape	nucleus	59.52	62.08
KRH17028	Soybean	nucleus	58.66	60.96
Bra020355.1-P	Field mustard	nucleus	56.6	60.33
CDY32686	Canola	nucleus	56.26	60.18
KRH72668	Soybean	nucleus	29.67	59.45
CDY02834	Canola	nucleus	56.26	59.31
AT5G58760.1	Thale cress	nucleus	56.6	59.25
Solyc09g031610.2.1	Tomato	nucleus	54.55	54.17
PGSC0003DMT400056773	Potato	nucleus	13.21	53.1

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	EMBL:AK111907	EMBL:AK112097	ProteinID:BAB16450.1
ProteinID:BAS70324.1	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0046872	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os01g0141700	EnsemblPlants:Os01t0141700-01	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00000A91D8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015622245.1	SEG:seg	:	:	:

Description

UV-damaged DNA binding protein 2, Ultraviolet-damaged DNA binding protein 2Similar to predicted protein. (Os01t0141700-01)

Coordinates

chr1:-:2250838..2255073

Molecular Weight (calculated)

64771.0 Da

IEP (calculated)

8.056

GRAVY (calculated)

-0.700

Length

583 amino acids

Sequence
(BLAST)

001: MGPTTRARFV HNRRRRRRRG PYAAPDDDDE EEDQQEASSS SSSSDEGEED AEEEGSGEVD DDDGEAAEPS GKEEEVSPVA AAARSGRKAS ITISLKKVCK
101: VCKSTGHEAG FKGAVYIDCP RKPCFLCKMP GHTTLTCPHR VAMEHGVIPA SRRNTNTSLD YVFQSQVKGK IPMVKPQFLI PNQLECGNIK FHQRRVTCLE
201: FHPTKNNVLL SGDKKGLLGV WDYVKLHEKI TYDSVHSCIL NSMKFDTTND GLLYTASSDG TISSTDLDTG IGSSLLNLNP NGWNGPSTWR MIYGMDFNSD
301: KGLLLVADSF GFLHLLDRRL KARIGDPILI HKKGSKVTSL HCNPAQPEVL LSSGNDHYAR IWDTRKLEPN SAFVSLAHGR VVNSGYFSPQ SGNKILTTCQ
401: DNRIRVWDYI FGNLESPSRE IVHSHDFNRH LTPFKAEWDP KDHTETVAVI GRYISENYNG IALHPIDFID TSTGKLLAEV MDPDITTISP VNKLHPRDDI
501: LASGSSRSIF IWKPKTESDA TEERNREKAK EFVYGSGSRK KSNGKHENSS DDDSDGSCDG KKKKKAKKTR FTHTIKGKGK SKV

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.