CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77644
CDX87735
CDY03235
CDY33461
CDY35152
CDY43957
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	CDY68484	AT4G05420.1	16792691
AT5G58760.1	CDY69266	AT4G05420.1	16792691
AT5G58760.1	CDY69930	AT4G05420.1	16792691
AT5G58760.1	CDY70585	AT4G05420.1	16792691
AT5G58760.1	CDY68484	AT4G05420.1	18551167
AT5G58760.1	CDY69266	AT4G05420.1	18551167
AT5G58760.1	CDY69930	AT4G05420.1	18551167
AT5G58760.1	CDY70585	AT4G05420.1	18551167
AT5G58760.1	CDX77644	AT5G46210.1	18551167
AT5G58760.1	CDX87735	AT5G46210.1	18551167
AT5G58760.1	CDY03235	AT5G46210.1	18551167
AT5G58760.1	CDY33461	AT5G46210.1	18551167
AT5G58760.1	CDY35152	AT5G46210.1	18551167
AT5G58760.1	CDY43957	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32686	Canola	nucleus	94.58	95.96
AT5G58760.1	Thale cress	nucleus	86.08	85.46
KRH72670	Soybean	cytosol	34.0	71.21
VIT_06s0004g06550.t01	Wine grape	nucleus	69.98	69.23
KRH17028	Soybean	nucleus	69.26	68.27
KRH72668	Soybean	nucleus	34.72	65.98
Solyc09g031610.2.1	Tomato	nucleus	64.74	60.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	57.87	58.39
PGSC0003DMT400056773	Potato	nucleus	15.01	57.24
Os01t0141700-01	Rice	nucleus	59.31	56.26
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	56.6	54.91
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	56.6	54.72
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	56.78	54.51
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	56.78	53.86
Zm00001d008597_P001	Maize	mitochondrion, nucleus	52.98	51.4

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	EnsemblPlants:CDY02834	ProteinID:CDY02834	ProteinID:CDY02834.1
InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0080008	EnsemblPlantsGene:GSBRNA2T00115034001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320
SUPFAM:SSF50978	UniPathway:UPA00143	UniParc:UPI0004EB3573	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC02g10550D

Coordinates

chrLK031937:-:737260..741720

Molecular Weight (calculated)

62261.8 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.687

Length

553 amino acids

Sequence
(BLAST)

001: MGLTRNRRKK EPEIVIARDT ESSSSEEEEE EDDDDYPLSE SEKGDEAVKI ELEKSKAKGK APITVKLKKV CKVCKQPGHE AGFKGATYID CPMKPCFLCK
101: MPGHTTMSCP HRVVTDHRIL PTSHRNTKNP IDFVFMRQLQ PRIPPIKPPY VIPDQVHCAV IRYHSRRVTC LEFHPTRNNI LLSGDKKGQI GVWDFAKVYE
201: KSVYGNIHSV QVNNMRFSPT NDDMVYSASS DGNIGYTDLE TGTSSTLLNL NPNGWQGPTT WKMLYGLDIN SDKGLVLAAD NFGLLHMIDH RSNNVTGEPI
301: LIHKKGSKVV GLDCNPVHPE LLLSCGNDHF ARIWDMRKLQ PGESLNDLAH KRVVNSAYFS PSSGTKILTT SQDNRIRVWD SIFGDLDSPS REIVHSHDFN
401: RHLTPFKAEW DPKDASESLI VVGRYISENY NGAALHPIDF IDSSNGQLVA EVMDPNITTI TPVNKLHPRD DVLASGSSRS LFIWRPEEKT EMVEEKEKKE
501: KKIVICYGDS DKKGKKQKRG SDDEDEDDDM FSSKGKNIKA KAKTTKSTRR TKA

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.