CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11182
KRH21072
KRH21073
KRH25071
KRH42547
KRH43086
KRH58640
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	KRH25071	AT4G05420.1	16792691
AT5G58760.1	KRH43086	AT4G05420.1	16792691
AT5G58760.1	KRH59212	AT4G05420.1	16792691
AT5G58760.1	KRH59213	AT4G05420.1	16792691
AT5G58760.1	KRH25071	AT4G05420.1	18551167
AT5G58760.1	KRH43086	AT4G05420.1	18551167
AT5G58760.1	KRH59212	AT4G05420.1	18551167
AT5G58760.1	KRH59213	AT4G05420.1	18551167
AT5G58760.1	KRH11182	AT5G46210.1	18551167
AT5G58760.1	KRH21072	AT5G46210.1	18551167
AT5G58760.1	KRH21073	AT5G46210.1	18551167
AT5G58760.1	KRH42547	AT5G46210.1	18551167
AT5G58760.1	KRH58640	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17028	Soybean	nucleus	94.16	48.84
VIT_06s0004g06550.t01	Wine grape	nucleus	70.1	36.49
AT5G58760.1	Thale cress	nucleus	69.07	36.09
CDY02834	Canola	nucleus	65.98	34.72
CDY32686	Canola	nucleus	64.95	34.68
Bra020355.1-P	Field mustard	nucleus	64.95	34.55
Solyc09g031610.2.1	Tomato	nucleus	62.89	31.18
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	57.73	30.66
Os01t0141700-01	Rice	nucleus	59.45	29.67
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.73	29.47
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.73	29.37
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.39	28.99
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	57.39	28.64
Zm00001d008597_P001	Maize	mitochondrion, nucleus	53.26	27.19
PGSC0003DMT400056773	Potato	nucleus	0.69	1.38
KRH72670	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	UniProt:A0A0R0KZU8	EMBL:ACUP02001225	ncoils:Coil
InterPro:DDB2	EnsemblPlantsGene:GLYMA_02G2263002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009987	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH72668	ProteinID:KRH72668	ProteinID:KRH72668.1	ProteinID:KRH72669.1	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006ED72C5	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:41318280..41320838

Molecular Weight (calculated)

32317.6 Da

IEP (calculated)

6.902

GRAVY (calculated)

-0.490

Length

291 amino acids

Sequence
(BLAST)

001: MAPVTPRTAF PKVLIERDSD SEQSSSEEEE EKLDEEEEEE EVGVSTANEK TEKLELGSDA NRKGKAPITI SLKKVCKVCK KPGHEAGFKG AAYIDCPMKP
101: CFLCKMPGHT TLTCPHRVST EHGVVPAPRR KACKPLEYVF ERQLRPSLPS IKPKYVIPDQ VNCAVIRYHS RRITCLEFHP TKNNILLSGD KKGQLGVWDF
201: GKVYEKVVYG NIHSCLVNNM RFNPTNDCMV YSASSDGTIS CTDLETGISS SPLNLNPDGW QGPNTWKMLN GLDINSEKGL VLVADSFGFL H

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.