Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59212 | Soybean | cytosol, nucleus | 99.51 | 37.9 |
| CDY68484 | Canola | cytosol, endoplasmic reticulum, vacuole | 89.66 | 34.02 |
| CDY69266 | Canola | nucleus | 89.66 | 33.21 |
| KRH25071 | Soybean | nucleus | 93.1 | 31.66 |
| VIT_10s0003g04360.t01 | Wine grape | cytosol, nucleus, plasma membrane | 93.6 | 17.45 |
| Solyc02g021650.2.1 | Tomato | nucleus | 90.64 | 16.8 |
| Bra029577.1-P | Field mustard | nucleus, peroxisome, plastid | 89.66 | 16.76 |
| AT4G05420.1 | Thale cress | cytosol, nucleus, peroxisome | 89.66 | 16.73 |
| GSMUA_Achr8P07200_001 | Banana | cytosol, nucleus, plasma membrane | 86.7 | 16.16 |
| AT4G21100.1 | Thale cress | nucleus | 84.24 | 15.72 |
| Zm00001d039165_P046 | Maize | nucleus | 84.24 | 15.64 |
| KXG22678 | Sorghum | nucleus | 83.74 | 15.61 |
| TraesCSU01G002300.1 | Wheat | golgi, plastid | 83.74 | 15.6 |
| TraesCS1B01G473400.1 | Wheat | nucleus | 83.74 | 15.6 |
| TraesCS1D01G445700.1 | Wheat | unclear | 83.25 | 15.5 |
| HORVU1Hr1G094530.1 | Barley | nucleus, plastid | 84.73 | 15.04 |
| Zm00001d009745_P023 | Maize | cytosol, nucleus, plasma membrane, plastid | 79.8 | 14.74 |
| CDY57060 | Canola | cytosol, nucleus, plasma membrane | 79.31 | 14.6 |
| CDX76416 | Canola | cytosol | 76.35 | 13.74 |
| Bra020884.1-P | Field mustard | cytosol | 76.35 | 12.09 |
| TraesCS3B01G240600.1 | Wheat | cytosol | 60.59 | 11.9 |
| TraesCS3A01G210100.2 | Wheat | nucleus | 61.58 | 11.5 |
| HORVU3Hr1G050820.11 | Barley | plastid | 61.08 | 10.95 |
| KRG92964 | Soybean | nucleus | 22.17 | 3.71 |
| KRH36214 | Soybean | nucleus | 21.67 | 3.62 |
| KRG96340 | Soybean | nucleus, plastid | 23.15 | 3.39 |
| KRH68075 | Soybean | nucleus, plastid | 21.67 | 3.17 |
| PGSC0003DMT400009595 | Potato | nucleus | 3.94 | 3.07 |
| CDY50606 | Canola | golgi, mitochondrion, plasma membrane | 0.49 | 0.32 |
| CDY70585 | Canola | plastid | 0.0 | 0.0 |
| KRH59213 | Soybean | cytosol, plasma membrane, plastid | 0.0 | 0.0 |
| CDY54326 | Canola | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G056620.1 | Barley | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G056610.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY69930 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | Gene3D:3.30.980.30 | MapMan:35.1 | UniProt:A0A0R0IL47 | EMBL:ACUP02004846 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:DDB1 | EnsemblPlantsGene:GLYMA_08G129900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 |
| EnsemblPlants:KRH43086 | ProteinID:KRH43086 | ProteinID:KRH43086.1 | PFAM:PF03178 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF3 |
| UniParc:UPI0006EDE2A4 | InterPro:WD40/YVTN_repeat-like_dom_sf | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:9994943..9996091
Molecular Weight (calculated)
23129.4 Da
IEP (calculated)
4.916
GRAVY (calculated)
-0.360
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSISLLIYK HEEGAIEERA RDYNANWMSA VEIVDDDIYL GAENSFNLFT VRKNSEGATD EERGRLEVVG EYHLGEFVNR FRHGSLVMRL PDSDVGQIPT
101: VIFGTINGVI GVIASLPHEQ YVFLEKLQSN LRKVIKGVGG LSHEQWRSFN NEKKTVEARN FLDGDLIESF LDLNRSKMDE ISKAVDVSVE ELCKRVEELT
201: RLH
101: VIFGTINGVI GVIASLPHEQ YVFLEKLQSN LRKVIKGVGG LSHEQWRSFN NEKKTVEARN FLDGDLIESF LDLNRSKMDE ISKAVDVSVE ELCKRVEELT
201: RLH
0001: MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
0101: TRAMGDVSDR IGRPTDNGQV IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD FVEGPWSQNS LDNGADLLIP
0201: VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
0301: DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF
0401: ISETRILAMN LEDELEETEI EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV LLATGGGHLV YLEIGDGKLT
0501: EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
0601: KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ
0701: EQTRTFGICS LGNQSNSEES EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG RILVFIVEDG RLQLIAEKET
0801: KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
0901: DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK
1001: GVGGLSHEQW RSFNNEKRTA EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
Arabidopsis Description
DDB1ADDB1A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.