CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	KRH25071	AT4G05420.1	18223036
AT4G35050.1	KRH43086	AT4G05420.1	18223036
AT4G35050.1	KRH59212	AT4G05420.1	18223036
AT4G35050.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29002	Soybean	nucleus	92.77	92.31
VIT_03s0038g02430.t01	Wine grape	cytosol	70.07	70.07
PGSC0003DMT400015787	Potato	cytosol	67.83	67.49
Solyc01g111590.2.1	Tomato	cytosol	67.58	67.25
CDY47479	Canola	cytosol	67.58	65.46
Bra037289.1-P	Field mustard	cytosol	67.33	65.38
Bra001997.1-P	Field mustard	nucleus	68.08	65.31
CDY26787	Canola	cytosol	67.08	64.98
AT2G16780.1	Thale cress	cytosol	66.83	64.58
AT4G35050.1	Thale cress	cytosol	65.34	61.79
CDY70131	Canola	cytosol	31.92	61.24
HORVU2Hr1G092350.1	Barley	cytosol	20.95	60.43
GSMUA_Achr8P33950_001	Banana	nucleus	58.35	57.92
GSMUA_Achr1P26410_001	Banana	nucleus	58.6	57.74
Os09t0540600-01	Rice	cytosol	55.36	54.15
EER97107	Sorghum	cytosol	53.87	53.6
KRH42369	Soybean	nucleus	56.36	53.18
KRH58491	Soybean	nucleus	56.11	52.94
Zm00001d022614_P001	Maize	cytosol	52.87	52.61
TraesCS5D01G337800.1	Wheat	cytosol	52.87	52.48
TraesCS5A01G331900.1	Wheat	cytosol	52.87	52.35
TraesCS5B01G332200.1	Wheat	cytosol	53.12	52.21
HORVU5Hr1G084160.2	Barley	cytosol	50.12	47.97
KRH23320	Soybean	endoplasmic reticulum	31.42	27.45
KRH12388	Soybean	nucleus	31.42	24.8
KRH11018	Soybean	cytosol	18.95	24.68
KRH37388	Soybean	nucleus	31.42	24.56
KRH21268	Soybean	cytosol	19.45	24.53
KRH10009	Soybean	cytosol, mitochondrion, nucleus	21.7	22.03
KRH58776	Soybean	nucleus	25.19	21.35
KRH42676	Soybean	nucleus	25.69	20.85

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02007174	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_12G033100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Histone-bd_RBBP4_N	UniProt:I1LPT2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH24317
ProteinID:KRH24317	ProteinID:KRH24317.1	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233CA57	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2498908..2501738

Molecular Weight (calculated)

45156.2 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.550

Length

401 amino acids

Sequence
(BLAST)

001: MAEEYEEGGE VEEEFSVWKK NTPLLYDFFI SHPLQWPSLT VHWLPSSPQP HSHPSFNLHK LLLATHTSEG ESNFLMLADA SLPVDTSQHI VATDPNNPVL
101: PKVEISQRIS VDGEVNRARC MPQNPSIVGA KTCNSEVYVF DFTKERGSAC DPDLRLRGHD KEGYGLSWSP FKNGYLLSGS HDHKVCLWDV PGASQEKVLD
201: ALHIYEGHEN VVEDVSWNLK DENMFGSSGD DCKLIIWDLR TNKAQQSVKP HEKEVNFLSF NPYNEWILAT ASSDTDVGLF DTRKLAVPLH ILSSHTDEVF
301: QVEWDPNHET VLASSGADRR LMVWDLNRVG GEQIEGDGEG GPPELLFSHG GHKGKISDFS WNRNQPWVIS SVAEDNSFHV WQMAESIYND GDDDNMWTAD
401: D

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.