Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021650.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35050.1 | Solyc02g021650.2.1 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015787 | Potato | cytosol | 97.77 | 97.77 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 72.95 | 73.32 |
| CDY47479 | Canola | cytosol | 69.73 | 67.87 |
| Bra037289.1-P | Field mustard | cytosol | 69.48 | 67.8 |
| CDY26787 | Canola | cytosol | 69.48 | 67.63 |
| KRH24317 | Soybean | nucleus | 67.25 | 67.58 |
| KRH29002 | Soybean | nucleus | 67.25 | 67.25 |
| AT2G16780.1 | Thale cress | cytosol | 69.23 | 67.23 |
| Bra001997.1-P | Field mustard | nucleus | 68.98 | 66.51 |
| AT4G35050.1 | Thale cress | cytosol | 67.25 | 63.92 |
| CDY70131 | Canola | cytosol | 32.75 | 63.16 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 60.3 | 60.15 |
| HORVU2Hr1G092350.1 | Barley | cytosol | 20.35 | 58.99 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 59.31 | 58.72 |
| EER97107 | Sorghum | cytosol | 55.83 | 55.83 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 55.58 | 54.9 |
| Os09t0540600-01 | Rice | cytosol | 55.83 | 54.88 |
| TraesCS5A01G331900.1 | Wheat | cytosol | 55.09 | 54.81 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 54.84 | 54.7 |
| Zm00001d022614_P001 | Maize | cytosol | 54.59 | 54.59 |
| Solyc01g104510.2.1 | Tomato | nucleus | 56.08 | 53.3 |
| HORVU5Hr1G084160.2 | Barley | cytosol | 51.61 | 49.64 |
| Solyc03g121580.2.1 | Tomato | nucleus | 32.75 | 28.7 |
| Solyc07g039330.2.1 | Tomato | nucleus | 26.05 | 27.85 |
| Solyc03g062940.2.1 | Tomato | cytosol | 17.62 | 22.47 |
| Solyc07g039200.2.1 | Tomato | nucleus | 25.31 | 22.08 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 20.6 | 20.91 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.33 | 19.44 |
| Solyc07g039320.2.1 | Tomato | nucleus | 7.2 | 19.08 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.12 | 18.21 |
| Solyc05g014070.1.1 | Tomato | cytosol, mitochondrion, nucleus | 3.72 | 12.71 |
Protein Annotations
| MapMan:12.2.1.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4B421 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF137 | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc01g111590.2 | EnsemblPlants:Solyc01g111590.2.1 | UniParc:UPI000276770E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:-:97813029..97815971
Molecular Weight (calculated)
45350.7 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.482
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEELEAAG ETEQDVEEEF AVWKKNTPLL YDLVVCHALE WPSLTVQWLP SPTTDDGAFA VHKLILGTHT SDDCPNFLMV AKVHLPRNPA SGLEHNLMNP
101: QIPKVEIVQK IHVDGEVNRA RCMPQKPAVV AAKTSSSEVY VFDSAKQPLD HEGGSCNPDV RLRGHDKEGY GLSWSPFKEG FLLSGSNDQK ICLWDISALP
201: QDKVLMAHHT YEEHEDVVED VSWHPKNENL FGSVGDDCRL IIWDFRTNKA QHSVLVHEKE VNYLSFNSYT EWVLATASSD STVGLFDMRK LSSPLHVFGS
301: HTDEVFQVEW DPNHETVLAS SGGDRRLMVW DLNRIGDEQL EGEAEDGPSE LLFSHGGHKA KISDFSWNKN EPWVISSVAE DNCVQVWQMA ESIYREDNDN
401: GNC
101: QIPKVEIVQK IHVDGEVNRA RCMPQKPAVV AAKTSSSEVY VFDSAKQPLD HEGGSCNPDV RLRGHDKEGY GLSWSPFKEG FLLSGSNDQK ICLWDISALP
201: QDKVLMAHHT YEEHEDVVED VSWHPKNENL FGSVGDDCRL IIWDFRTNKA QHSVLVHEKE VNYLSFNSYT EWVLATASSD STVGLFDMRK LSSPLHVFGS
301: HTDEVFQVEW DPNHETVLAS SGGDRRLMVW DLNRIGDEQL EGEAEDGPSE LLFSHGGHKA KISDFSWNKN EPWVISSVAE DNCVQVWQMA ESIYREDNDN
401: GNC
001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
Arabidopsis Description
MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.