Factsheet for AT4G35050.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G16780.1	Thale cress	cytosol	80.9	82.65
VIT_03s0038g02430.t01	Wine grape	cytosol	64.62	68.33
Solyc01g111590.2.1	Tomato	cytosol	63.92	67.25
PGSC0003DMT400015787	Potato	cytosol	63.44	66.75
KRH24317	Soybean	nucleus	61.79	65.34
KRH29002	Soybean	nucleus	61.32	64.52
GSMUA_Achr1P26410_001	Banana	nucleus	56.13	58.48
GSMUA_Achr8P33950_001	Banana	nucleus	55.66	58.42
HORVU2Hr1G092350.1	Barley	cytosol	18.4	56.12
EER97107	Sorghum	cytosol	49.53	52.11
Os09t0540600-01	Rice	cytosol	50.0	51.71
AT5G58230.1	Thale cress	nucleus	51.65	51.65
Zm00001d022614_P001	Maize	cytosol	48.58	51.12
TraesCS5D01G337800.1	Wheat	cytosol	48.58	50.99
TraesCS5A01G331900.1	Wheat	cytosol	48.58	50.86
TraesCS5B01G332200.1	Wheat	cytosol	48.58	50.49
HORVU5Hr1G084160.2	Barley	cytosol	45.75	46.3
AT2G19520.1	Thale cress	nucleus	32.55	27.22
AT4G29730.1	Thale cress	nucleus	30.9	26.9
AT1G29260.1	Thale cress	cytosol	17.22	23.03
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	22.17	20.04

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:829657	ProteinID:AEE86455.1	EMBL:AF016848	ArrayExpress:AT4G35050
EnsemblPlantsGene:AT4G35050	RefSeq:AT4G35050	TAIR:AT4G35050	RefSeq:AT4G35050-TAIR-G	EnsemblPlants:AT4G35050.1	TAIR:AT4G35050.1
Unigene:At.2099	EMBL:BT020491	EMBL:BT025992	ProteinID:CAA17770.1	ProteinID:CAB80222.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0080008
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	Symbol:MSI3	RefSeq:NP_195231.1
UniProt:O22469	PFAM:PF00400	PFAM:PF12265	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	UniProt:Q5HZ33	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000012F60E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

MSI3At4g35050 [Source:UniProtKB/TrEMBL;Acc:Q5HZ33]

Coordinates

chr4:-:16682580..16684928

Molecular Weight (calculated)

47985.7 Da

IEP (calculated)

4.302

GRAVY (calculated)

-0.573

Length

424 amino acids

Sequence
(BLAST)

001: MAAEEGKDEA GLDQVEEEFS IWKRNTPFLY DLMISHPLEW PSLTLHWVPS TPIPYSKDPY FAVHKLILGT HTSGGAQDFL MVADVVIPTP DAEPGLGGRD
101: QEPIVPKVEI KQKIRVDGEV NRARCMPQKP TLVGAKTSGS EVFLFDYARL SGKPQTSECD PDLRLMGHEQ EGYGLAWSSF KEGYLLSGSQ DQRICLWDVS
201: ATATDKVLNP MHVYEGHQSI IEDVAWHMKN ENIFGSAGDD CQLVIWDLRT NQMQHQVKVH EREINYLSFN PFNEWVLATA SSDSTVALFD LRKLTAPLHV
301: LSKHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDINRVGD EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKDEPWVI SSVAEDNSLQ VWQMAESIYR
401: EDDEDEDDDD EGNQNAQHSN ENQK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.