Factsheet for AT5G58230.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g01550.t01	Wine grape	nucleus	92.22	92.22
PGSC0003DMT400061016	Potato	cytosol	91.27	91.27
Solyc01g104510.2.1	Tomato	nucleus	90.8	90.8
KRH42369	Soybean	nucleus	90.33	90.12
KRH58491	Soybean	nucleus	89.86	89.65
GSMUA_Achr4P31680_001	Banana	nucleus	88.44	88.65
CDY02805	Canola	nucleus	85.85	86.87
CDY43875	Canola	nucleus	86.32	85.92
TraesCS5D01G385600.1	Wheat	nucleus	86.56	85.75
TraesCS5D01G385800.1	Wheat	cytosol	45.05	85.65
TraesCS5B01G378700.1	Wheat	nucleus	86.32	85.51
Os03t0640100-01	Rice	cytosol	86.32	85.51
TraesCSU01G072700.1	Wheat	nucleus	86.08	85.28
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	86.32	84.92
Zm00001d033252_P001	Maize	cytosol, nucleus, plastid	23.35	84.62
Zm00001d033247_P001	Maize	nucleus	85.85	84.45
CDY62688	Canola	nucleus	84.43	84.04
Bra002667.1-P	Field mustard	nucleus	84.43	84.04
Bra020379.1-P	Field mustard	cytosol	80.19	81.73
CDY32715	Canola	nucleus	80.19	81.73
Zm00001d013702_P001	Maize	nucleus	82.55	81.21
GSMUA_Achr5P02390_001	Banana	cytosol	75.47	76.19
CDY58569	Canola	cytosol	95.05	63.36
CDX88663	Canola	nucleus	95.05	63.36
OQU91278	Sorghum	cytosol, nucleus, plastid	86.32	60.2
AT2G16780.1	Thale cress	cytosol	53.3	54.46
AT4G35050.1	Thale cress	cytosol	51.65	51.65
AT2G19520.1	Thale cress	nucleus	33.25	27.81
AT4G29730.1	Thale cress	nucleus	31.13	27.1
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	25.0	22.6
AT1G29260.1	Thale cress	cytosol	16.04	21.45

Protein Annotations

MapMan:12.2.1.3	MapMan:12.3.3.1.1.1	Gene3D:2.130.10.10	EntrezGene:835935	UniProt:A0A178UPV1	ProteinID:AED97021.1
EMBL:AF016846	ArrayExpress:AT5G58230	EnsemblPlantsGene:AT5G58230	RefSeq:AT5G58230	TAIR:AT5G58230	RefSeq:AT5G58230-TAIR-G
EnsemblPlants:AT5G58230.1	TAIR:AT5G58230.1	EMBL:AY059874	EMBL:AY114646	Unigene:At.66738	ProteinID:BAA96914.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0005737
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006325	GO:GO:0006349	GO:GO:0006351
GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0010026	GO:GO:0010214
GO:GO:0016043	GO:GO:0016569	GO:GO:0030154	GO:GO:0031507	GO:GO:0040029	GO:GO:0043234
GO:GO:0045787	GO:GO:0048316	GO:GO:0048366	GO:GO:0070828	GO:GO:0080008	GO:GO:2000653
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	Symbol:MSI1	RefSeq:NP_200631.1
UniProt:O22467	ProteinID:OAO95899.1	PFAM:PF00400	PFAM:PF12265	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001007	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0009089	PO:PO:0020003	PO:PO:0020030	PO:PO:0020038	PO:PO:0020099
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025074	PO:PO:0025281	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF82	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0000000E4B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]

Coordinates

chr5:+:23556012..23558245

Molecular Weight (calculated)

48197.1 Da

IEP (calculated)

4.435

GRAVY (calculated)

-0.555

Length

424 amino acids

Sequence
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.