Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 91.18 | 91.18 |
| Zm00001d033247_P001 | Maize | nucleus | 90.49 | 90.49 |
| Os03t0640100-01 | Rice | cytosol | 88.17 | 88.78 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 82.37 | 83.92 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 22.74 | 83.76 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 82.13 | 83.49 |
| AT5G58230.1 | Thale cress | nucleus | 81.21 | 82.55 |
| PGSC0003DMT400061016 | Potato | cytosol | 80.97 | 82.31 |
| Solyc01g104510.2.1 | Tomato | nucleus | 80.74 | 82.08 |
| KRH42369 | Soybean | nucleus | 80.51 | 81.65 |
| KRH58491 | Soybean | nucleus | 80.05 | 81.18 |
| CDY43875 | Canola | nucleus | 75.41 | 76.29 |
| CDY02805 | Canola | nucleus | 73.09 | 75.18 |
| Bra002667.1-P | Field mustard | nucleus | 73.78 | 74.65 |
| CDY62688 | Canola | nucleus | 73.78 | 74.65 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 71.93 | 73.81 |
| CDY32715 | Canola | nucleus | 69.61 | 72.12 |
| Bra020379.1-P | Field mustard | cytosol | 69.61 | 72.12 |
| CDY58569 | Canola | cytosol | 79.58 | 53.93 |
| CDX88663 | Canola | nucleus | 79.58 | 53.93 |
| Zm00001d022614_P001 | Maize | cytosol | 47.8 | 51.12 |
| Zm00001d043683_P001 | Maize | cytosol | 12.53 | 26.21 |
| Zm00001d011705_P002 | Maize | cytosol | 30.63 | 25.38 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 30.16 | 24.57 |
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 12.99 | 24.35 |
| Zm00001d016170_P001 | Maize | cytosol | 17.4 | 23.51 |
| Zm00001d010850_P003 | Maize | plasma membrane | 24.83 | 22.25 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 24.59 | 22.18 |
| Zm00001d050047_P001 | Maize | nucleus | 10.67 | 16.67 |
| Zm00001d052871_P001 | Maize | cytosol | 1.16 | 16.67 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | UniProt:A0A1D6GLJ3 | ProteinID:AQK64183.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0008450C99 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d013702 | EnsemblPlants:Zm00001d013702_P001 | EnsemblPlants:Zm00001d013702_T001 |
Description
nucleosome/chromatin assembly factor C
Coordinates
chr5:+:17942846..17948363
Molecular Weight (calculated)
48982.1 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.495
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKAGSGVAD EEDFRAEVDE RLINEEYKIW KKNTPFLYDL VITHALEWPS LTVQWLPERT EPPGKDHWVQ KMILGTHTSD NEPNYLMLAQ VQLPHEDTEA
101: DVRHYDDEHS DNGLFGAATG EVQIVQQINH DGEVNRARYM PQNSFIIATK TVSAEVYVFD YSKHPSKPPL DGACNPDLRL KGHNSEGYGL SWSIFNEGHL
201: LSGSEDAQIC LWDIKANSRN KSLDALQIFK HHDGVVEDVA WHLRHGYLFG SVGDDHHLLI WDLRSPSPAR PVQSVVAHQG EVNCLAFNPF NEWVVATGST
301: DKTVKLFDLR KIHTSLHTFD CHKEEVFQVG WSPKNEPILA SCCLGRRLMV WDLSRIDQEQ TPQDAQDGPP ELLFIHGGHT SKISDFSWNP CEDWVIASVA
401: EDNILQIWQM ADNIYLDEAD LPISDELENS Y
101: DVRHYDDEHS DNGLFGAATG EVQIVQQINH DGEVNRARYM PQNSFIIATK TVSAEVYVFD YSKHPSKPPL DGACNPDLRL KGHNSEGYGL SWSIFNEGHL
201: LSGSEDAQIC LWDIKANSRN KSLDALQIFK HHDGVVEDVA WHLRHGYLFG SVGDDHHLLI WDLRSPSPAR PVQSVVAHQG EVNCLAFNPF NEWVVATGST
301: DKTVKLFDLR KIHTSLHTFD CHKEEVFQVG WSPKNEPILA SCCLGRRLMV WDLSRIDQEQ TPQDAQDGPP ELLFIHGGHT SKISDFSWNP CEDWVIASVA
401: EDNILQIWQM ADNIYLDEAD LPISDELENS Y
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.