Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70287 | Canola | nucleus | 49.51 | 55.74 |
| PGSC0003DMT400006393 | Potato | nucleus | 69.42 | 41.33 |
| EES01357 | Sorghum | nucleus | 80.1 | 36.42 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 78.64 | 34.39 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 78.16 | 34.18 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 78.16 | 34.18 |
| Os01t0710000-01 | Rice | nucleus | 74.76 | 34.0 |
| CDY29763 | Canola | endoplasmic reticulum | 54.37 | 33.23 |
| CDX82696 | Canola | nucleus | 69.42 | 32.5 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 70.87 | 32.23 |
| HORVU3Hr1G066930.1 | Barley | plastid | 78.64 | 31.83 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 81.55 | 31.76 |
| KRH23320 | Soybean | endoplasmic reticulum | 69.42 | 31.15 |
| Solyc03g121580.2.1 | Tomato | nucleus | 69.42 | 31.09 |
| Zm00001d011705_P002 | Maize | cytosol | 78.16 | 30.96 |
| CDX81933 | Canola | nucleus | 69.9 | 29.75 |
| Bra040678.1-P | Field mustard | nucleus | 70.39 | 29.18 |
| CDY48711 | Canola | nucleus | 70.39 | 28.83 |
| KRH12388 | Soybean | nucleus | 70.87 | 28.74 |
| AT2G19520.1 | Thale cress | nucleus | 70.39 | 28.6 |
| CDY03358 | Canola | nucleus | 69.9 | 28.57 |
| Bra031085.1-P | Field mustard | nucleus | 69.9 | 28.57 |
| KRH37388 | Soybean | nucleus | 70.87 | 28.46 |
| CDY21661 | Canola | nucleus | 69.9 | 28.46 |
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 29.61 | 26.52 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 65.05 | 26.38 |
| Bra036717.1-P | Field mustard | nucleus | 59.71 | 25.62 |
| CDY43523 | Canola | nucleus | 57.28 | 24.84 |
| CDY06779 | Canola | nucleus | 58.25 | 24.74 |
| Bra011133.1-P | Field mustard | nucleus | 56.8 | 24.58 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 46.12 | 24.05 |
| AT4G29730.1 | Thale cress | nucleus | 56.31 | 23.82 |
| Zm00001d050047_P001 | Maize | nucleus | 23.79 | 17.75 |
| Solyc07g039330.2.1 | Tomato | nucleus | 32.04 | 17.51 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 26.7 | 12.76 |
| Zm00001d013702_P001 | Maize | nucleus | 26.21 | 12.53 |
| Zm00001d033247_P001 | Maize | nucleus | 26.21 | 12.53 |
| Zm00001d022614_P001 | Maize | cytosol | 21.84 | 11.17 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.39 | 8.79 |
| Zm00001d010850_P003 | Maize | plasma membrane | 20.39 | 8.73 |
| Zm00001d016170_P001 | Maize | cytosol | 9.71 | 6.27 |
| CDY35867 | Canola | cytosol | 4.37 | 3.17 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 0.0 | 0.0 |
| Zm00001d052871_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d043683_P001 | EnsemblPlants:Zm00001d043683_T001 | EnsemblPlantsGene:Zm00001d043683 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF184 |
| PFAM:PF12265 | ProteinID:ONM38808.1 | SEG:seg | UniParc:UPI000844DBE0 | UniProt:A0A1D6NE96 | MapMan:35.1 |
Description
WD-40 repeat-containing protein MSI4
Coordinates
chr3:-:207236823..207239896
Molecular Weight (calculated)
22756.3 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.114
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MKERGGSRAA VDERYAQWKS LIPVLYDWFA NHNLVWPSLS CRALVGMASE GAGMMGLYGG LAFCDARVYE RTDGSVPNTL VIANCEVVKP RVAAAEHISQ
101: FNEEARSPFV KKYKTIVHPG EMVDALFVFL PCKQVNRIRE LPQNSKIIAT HTDSPDVLVW DVEAQPNRHA VLGASESRPD LILTGHQENA EFALAMCPAE
201: PYVLSG
101: FNEEARSPFV KKYKTIVHPG EMVDALFVFL PCKQVNRIRE LPQNSKIIAT HTDSPDVLVW DVEAQPNRHA VLGASESRPD LILTGHQENA EFALAMCPAE
201: PYVLSG
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.