CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036717.1-P	Field mustard	nucleus	95.23	99.79
CDY03358	Canola	nucleus	98.81	98.61
CDX81933	Canola	nucleus	90.46	94.01
CDY21661	Canola	nucleus	93.64	93.08
AT2G19520.1	Thale cress	nucleus	92.45	91.72
CDY29763	Canola	endoplasmic reticulum	61.43	91.69
CDY70287	Canola	nucleus	32.6	89.62
CDY35867	Canola	cytosol	48.91	86.62
CDX82696	Canola	nucleus	75.35	86.14
GSMUA_Achr4P08720_001	Banana	cytosol	64.61	79.85
KRH12388	Soybean	nucleus	79.72	78.94
KRH37388	Soybean	nucleus	79.92	78.36
EES01357	Sorghum	nucleus	70.38	78.15
Os01t0710000-01	Rice	nucleus	69.18	76.82
CDY06779	Canola	nucleus	73.16	75.88
TraesCS3A01G250900.2	Wheat	cytosol	70.38	75.16
TraesCS3B01G280400.1	Wheat	nucleus	70.38	75.16
CDY43523	Canola	nucleus	70.97	75.16
TraesCS3D01G251300.2	Wheat	nucleus	70.18	74.95
VIT_11s0016g02170.t01	Wine grape	nucleus	73.16	72.44
HORVU3Hr1G066930.1	Barley	plastid	71.77	70.92
Zm00001d043683_P001	Maize	cytosol	28.83	70.39
Zm00001d052871_P001	Maize	cytosol	4.17	70.0
Solyc07g039330.2.1	Tomato	nucleus	51.49	68.7
GSMUA_Achr3P32330_001	Banana	cytosol	24.25	67.78
Zm00001d011705_P002	Maize	cytosol	68.79	66.54
Zm00001d043682_P002	Maize	cytosol, plastid	69.18	65.78
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	27.44	60.0
GSMUA_Achr7P09120_001	Banana	nucleus	53.68	59.34
GSMUA_Achr7P24160_001	Banana	nucleus	28.23	59.17
Zm00001d050047_P001	Maize	nucleus	21.87	39.86
CDY62688	Canola	nucleus	27.83	32.86
CDY43875	Canola	nucleus	27.63	32.63
CDY47479	Canola	cytosol	26.84	32.61
CDY26787	Canola	cytosol	26.64	32.37
CDY02805	Canola	nucleus	26.44	31.74
CDY32715	Canola	nucleus	25.84	31.25
CDY70131	Canola	cytosol	11.93	28.71
CDY03357	Canola	plastid	22.07	23.47
CDY48712	Canola	plastid	21.87	23.35
CDY21659	Canola	nucleus	21.87	23.26
CDX81935	Canola	nucleus	21.87	23.16
CDX88663	Canola	nucleus	27.83	22.01
CDY58569	Canola	cytosol	27.83	22.01
CDY43325	Canola	cytosol	13.52	21.45
CDX90175	Canola	cytosol	13.52	21.45
CDX82701	Canola	nucleus	16.5	21.39
CDY50786	Canola	cytosol	13.32	21.14
CDX99799	Canola	cytosol	13.32	21.14
CDY35872	Canola	cytosol, nucleus, plastid	14.12	20.88

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A078IFB3	EnsemblPlants:CDY48711	ProteinID:CDY48711	ProteinID:CDY48711.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00091601001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE8602	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaA09g09860DBnaA09g09860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFB3]

Coordinates

chrLK032788:+:4443..7723

Molecular Weight (calculated)

55443.6 Da

IEP (calculated)

5.854

GRAVY (calculated)

-0.599

Length

503 amino acids

Sequence
(BLAST)

001: MESDEAATAS PQASGGTVTP APKKRGRKPK NKDESQEQIS GGKMKESGKK TKQQEEQSVD EKYSQWKGLV PILYDWLANH NLVWPSLSCR SWGPQLDQAT
101: YKNRQRLYLS EQTDGSVPNT LVIANCEVVK PRVAAAEHIS QFNEEARSPF VKKYKTIIHP GEVNRIRELP QNSKIVATHT DSPDVLIWDV ETQPNRHAVL
201: GAASSRPDLI LTGHQDNAEF ALAMCPTEPF VLSGGKDKMV VLWSIQDHIT TVGTDSKSSG SIIKQTGEGG DKTESPSVGP RGVYQGHDDT VEDVAFSPTS
301: AQEFCSVGDD SCLILWDART GTSPVTKVEK AHDADLHCVD WNPHDDNLIL TGSADNTVRL YDRRNLTSNG VGTPIYKFEG HKAAVLCVQW SPDKASVFGS
401: SAEDGLLNIW DYDRVSKKSD RAAKNPAGLF FQHAGHRDKV VDFHWNAADP WTIVSVSDDC ETTGGGGTLQ IWRMSDLIYR PEEEVLTELE KFKSHVMTCA
501: SKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.