Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0132400-01 | Rice | nucleus | 31.18 | 69.28 |
| CDX82701 | Canola | nucleus | 77.94 | 68.3 |
| Bra040681.1-P | Field mustard | cytosol | 67.65 | 63.54 |
| CDY48712 | Canola | plastid | 86.18 | 62.21 |
| CDY21659 | Canola | nucleus | 85.88 | 61.73 |
| CDY03357 | Canola | plastid | 85.59 | 61.52 |
| CDX81935 | Canola | nucleus | 85.88 | 61.47 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 53.24 | 59.34 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 80.88 | 58.64 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 60.0 | 51.39 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 66.76 | 47.89 |
| KRH58776 | Soybean | nucleus | 66.47 | 47.78 |
| PGSC0003DMT400034220 | Potato | nucleus | 63.82 | 46.27 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 62.35 | 45.3 |
| KRH42676 | Soybean | nucleus | 65.0 | 44.74 |
| Solyc07g039200.2.1 | Tomato | nucleus | 60.29 | 44.37 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 48.82 | 43.8 |
| Os11t0134500-01 | Rice | nucleus | 59.12 | 43.23 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.29 | 42.53 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 60.0 | 42.32 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.71 | 42.12 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 59.71 | 42.12 |
| OQU82815 | Sorghum | mitochondrion | 55.88 | 41.39 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 57.65 | 41.0 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 57.65 | 40.92 |
| Zm00001d010850_P003 | Maize | plasma membrane | 57.35 | 40.54 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 54.41 | 39.96 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 56.18 | 39.54 |
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 55.88 | 39.34 |
| CDY35867 | Canola | cytosol | 15.88 | 19.01 |
| CDY26787 | Canola | cytosol | 22.06 | 18.12 |
| CDY47479 | Canola | cytosol | 22.06 | 18.12 |
| CDY70131 | Canola | cytosol | 10.59 | 17.22 |
| CDY02805 | Canola | nucleus | 21.18 | 17.18 |
| CDY32715 | Canola | nucleus | 20.88 | 17.07 |
| CDY43875 | Canola | nucleus | 20.88 | 16.67 |
| CDY62688 | Canola | nucleus | 20.88 | 16.67 |
| CDY29763 | Canola | endoplasmic reticulum | 16.18 | 16.32 |
| CDY43523 | Canola | nucleus | 21.47 | 15.37 |
| CDY06779 | Canola | nucleus | 21.47 | 15.05 |
| CDX81933 | Canola | nucleus | 20.59 | 14.46 |
| CDY48711 | Canola | nucleus | 20.88 | 14.12 |
| CDY03358 | Canola | nucleus | 20.88 | 14.09 |
| CDY21661 | Canola | nucleus | 20.88 | 14.03 |
| CDY43325 | Canola | cytosol | 12.65 | 13.56 |
| CDX90175 | Canola | cytosol | 12.65 | 13.56 |
| CDX99799 | Canola | cytosol | 12.35 | 13.25 |
| CDY50786 | Canola | cytosol | 12.06 | 12.93 |
| CDX82696 | Canola | nucleus | 15.29 | 11.82 |
| CDX88663 | Canola | nucleus | 21.47 | 11.48 |
| CDY58569 | Canola | cytosol | 21.47 | 11.48 |
| CDY70287 | Canola | nucleus | 2.65 | 4.92 |
| Os12t0132300-02 | Rice | cytosol | 1.18 | 2.19 |
| Os11t0134400-00 | Rice | cytosol | 1.18 | 2.19 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A078HDH3 | EnsemblPlants:CDY35872 | ProteinID:CDY35872 | ProteinID:CDY35872.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00059409001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDB01F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaA07g01150DBnaA07g01150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDH3]
Coordinates
chrLK032363:+:20271..22114
Molecular Weight (calculated)
37698.5 Da
IEP (calculated)
5.215
GRAVY (calculated)
-0.395
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAGTQAEKA LWNSIGLFKI SNVSGKRRDV VPKTLVNGDD GMEDEDDEDE DKSSWLMLCL KQNLGMQVRR IMLKYRYDIV HIISHLNALA ESETEGKGKY
101: GTSPILNQAP LVNFSGHKDE GYALDWSPAT AGRLLSGDCM SMIHLWEPAS GSWTVDPIPL SGHTASVEDI QWSPGEANPA LSFKVHKADV NVISWNRLAS
201: CMLASGSDDG TFSIHDLRVI KDKDKAKVAH FGYHKHPITS IEWSAHESST LAVSSGDNQL TIWDLSLEKD EEEFKAQSKE QVNTPQDLPP QLLFVHQGQK
301: DLKELHWHNQ IPGMIVSTAA DGFNILMPYK IQNTLPDLAA
101: GTSPILNQAP LVNFSGHKDE GYALDWSPAT AGRLLSGDCM SMIHLWEPAS GSWTVDPIPL SGHTASVEDI QWSPGEANPA LSFKVHKADV NVISWNRLAS
201: CMLASGSDDG TFSIHDLRVI KDKDKAKVAH FGYHKHPITS IEWSAHESST LAVSSGDNQL TIWDLSLEKD EEEFKAQSKE QVNTPQDLPP QLLFVHQGQK
301: DLKELHWHNQ IPGMIVSTAA DGFNILMPYK IQNTLPDLAA
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.