Factsheet for Zm00001d044641_P004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	94.56	94.36
Zm00001d010850_P003	Maize	plasma membrane	93.51	92.93
Os11t0134500-01	Rice	nucleus	80.33	82.58
TraesCS4B01G131200.1	Wheat	nucleus	81.8	81.12
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	81.8	81.12
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	81.38	80.71
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	81.38	80.71
Os12t0132400-01	Rice	nucleus	25.52	79.74
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	76.57	75.78
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	76.15	75.36
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	70.08	71.58
VIT_11s0016g02270.t01	Wine grape	nucleus	67.78	68.35
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	42.89	67.21
KRH58776	Soybean	nucleus	66.32	67.02
PGSC0003DMT400034220	Potato	nucleus	64.64	65.88
Solyc07g039200.2.1	Tomato	nucleus	62.55	64.72
CDY48712	Canola	plastid	63.6	64.54
CDY03357	Canola	plastid	63.6	64.27
CDY21659	Canola	nucleus	63.18	63.85
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.19	63.84
CDX81935	Canola	nucleus	63.39	63.79
KRH42676	Soybean	nucleus	65.9	63.77
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	62.13	63.33
Bra040681.1-P	Field mustard	cytosol	46.03	60.77
Solyc05g014090.1.1	Tomato	mitochondrion	50.0	60.2
CDX82701	Canola	nucleus	48.33	59.54
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	57.11	58.96
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	46.44	58.58
CDY35872	Canola	cytosol, nucleus, plastid	41.0	57.65
Zm00001d022614_P001	Maize	cytosol	21.97	26.05
Zm00001d013702_P001	Maize	nucleus	22.18	24.59
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	21.76	24.13
Zm00001d033247_P001	Maize	nucleus	21.34	23.67
Zm00001d016170_P001	Maize	cytosol	15.06	22.57
Zm00001d033252_P001	Maize	cytosol, nucleus, plastid	5.44	22.22
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	10.46	21.74
Zm00001d011705_P002	Maize	cytosol	22.59	20.77
Zm00001d043683_P001	Maize	cytosol	8.79	20.39
Zm00001d043682_P002	Maize	cytosol, plastid	21.34	19.28
Zm00001d050047_P001	Maize	nucleus	8.58	14.86
Zm00001d052871_P001	Maize	cytosol	0.21	3.33
Os12t0132300-02	Rice	cytosol	1.26	3.28
Os11t0134400-00	Rice	cytosol	1.26	3.28

Protein Annotations

EntrezGene:103651663	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6NQ77	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM42103.1	PFAM:PF00400	PFAM:PF12265
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000220742B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d044641
EnsemblPlants:Zm00001d044641_P004	EnsemblPlants:Zm00001d044641_T004	SEG:seg	:	:	:

Description

Transducin family protein / WD-40 repeat family protein

Coordinates

chr3:+:233850082..233854326

Molecular Weight (calculated)

52644.4 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.477

Length

478 amino acids

Sequence
(BLAST)

001: MGRTIKKARK AKPKKSKKKT EASSSSNHAV ASGPAKVWQP GVDALEDGEE LQFDPEAYNY LRGFGIGWSC LSFDVVRDQL RLVRSEFPHT LYGVAGTQAE
101: KASLNYIGVF KLSNINGKKR EPIPASAVDG DTDVDSDSSS DEEDEEINED TKPILHLKKV AHAGCVNRIR SMTQKPHICA TWGDTGHVQV WDLSSFLNSL
201: AESGASAPKE DDIIHKHLPM KVFSGHKDEG YAIDWSPLVT GRLVSGDCNK CIHLWEPTSN NWNVDANPFV GHTASVEDLQ WSPTEADIFA SCSVDGTISI
301: WDVRTGKKPS ISVKAHKADV NVISWNRLAS CMIASGCDDG SFSVHDLRSI QDSLVAHFEY HKKAITSIEW SPHEASSLAV TSEDHQLTIW DLSLERDTEE
401: EAEFRAKMKE QANAPDDLPP QLLFAHQGQR DLKEVHWHPQ IPSMIISTAI DGFNVLMPSN IDTTIPGSTD TAMPPAEP

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.